Non-Coding RNA Search

Ss1.1-recc2834c_h20.5

Sequence:


               
               GTCCACCATCCCCAGTAACATGCGATACTTGAGTGGGTTCCGGGCATCTTCAAGGACCGG
GATGATGTTGGTTCGCTTCTTGGCCACATTGACGAGATCGCGGCCGGCGCGGTGGGAAAA
CTCGACCGCGTAGACCAGGCCATCCGGGCCGATGATGTCGGAGACGTGGGAGACCGTGGT
CCCCGAGGCAGCACCCAGGTACAGGACTTTGGACTTGGGCTTGATGTGAATCTGGTCGAC
CCCGCCCAGTATGGCCGCGGCCAGCTTGGAGCGGAACGGGTTCCACGTGCGGTACTCCTG
TTGTCACGCCACCCTCGGTCACCGTGACCCGCCGCTCACCGTATACCGACTGGCCTGGCA
CCATGTTCAGCGTGACCAGCGCATCCTCCGCCCCGCGGTAGATGAAGACGCCCTCGTGCC
GGTGCGGTTCCACCGACACGACGTGGGCGCCCTTCCTGCGGCGGTTCTTGCTCTTGCCAG
AGCCGCGCCGCTGCCCGCCGCCCCCGCGGTCCCTGCCGTCTCCGCCACCACGCCCCCGGC
CCCGGCCGCCGCCAAAGCCTCGCGTCCGCGCTCCGAAGCCGCCCTTGCCTCCCTGGCCGC
CGCTGTTGCCTCCTGCTCCCTTGCCCCCTCCTCCGCCGCCTCTCCCTCCGCCCCAGCCGC
CGCCCCAGCCGCCACCCCCGCGGCCGCCGGATCCGCCCCCGCGCGCGCTCACTGCAGACT
TCATGGTGCGTCCTGGGCGCTTGGGTGGGTGGCGGCGGATGGCAGGGGTTTCTAGTGGCT
CAGAGCGGTTGCCAGGGGCGCTGGTACCTGGGAGCCGTTGTCAGCGGTCACCAGAGACTC
CAGGCAGTGGTCCTGACGCTTGACGAACGTGGGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCACCATCCCCAGTAACATGCGATACTTGAGTGGGTTCCGGGCATCTTCAAGGACCGG
GATGATGTTGGTTCGCTTCTTGGCCACATTGACGAGATCGCGGCCGGCGCGGTGGGAAAA
CTCGACCGCGTAGACCAGGCCATCCGGGCCGATGATGTCGGAGACGTGGGAGACCGTGGT
CCCCGAGGCAGCACCCAGGTACAGGACTTTGGACTTGGGCTTGATGTGAATCTGGTCGAC
CCCGCCCAGTATGGCCGCGGCCAGCTTGGAGCGGAACGGGTTCCACGTGCGGTACTCCTG
TTGTCACGCCACCCTCGGTCACCGTGACCCGCCGCTCACCGTATACCGACTGGCCTGGCA
CCATGTTCAGCGTGACCAGCGCATCCTCCGCCCCGCGGTAGATGAAGACGCCCTCGTGCC
GGTGCGGTTCCACCGACACGACGTGGGCGCCCTTCCTGCGGCGGTTCTTGCTCTTGCCAG
AGCCGCGCCGCTGCCCGCCGCCCCCGCGGTCCCTGCCGTCTCCGCCACCACGCCCCCGGC
CCCGGCCGCCGCCAAAGCCTCGCGTCCGCGCTCCGAAGCCGCCCTTGCCTCCCTGGCCGC
CGCTGTTGCCTCCTGCTCCCTTGCCCCCTCCTCCGCCGCCTCTCCCTCCGCCCCAGCCGC
CGCCCCAGCCGCCACCCCCGCGGCCGCCGGATCCGCCCCCGCGCGCGCTCACTGCAGACT
TCATGGTGCGTCCTGGGCGCTTGGGTGGGTGGCGGCGGATGGCAGGGGTTTCTAGTGGCT
CAGAGCGGTTGCCAGGGGCGCTGGTACCTGGGAGCCGTTGTCAGCGGTCACCAGAGACTC
CAGGCAGTGGTCCTGACGCTTGACGAACGTGGGCGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-832, gnl|bosTau2|chr7 (53048212-53049056)
               

               
               1-832, gnl|Hg17|chr5 (167889816-167889026)
               

               
               1-832, gnl|Mm7|chr11 (35651474-35652191)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-832, gnl|bosTau2|chr7 (53048212-53049056)
               

               
               1-832, gnl|Hg17|chr5 (167889816-167889026)
               

               
               1-832, gnl|Mm7|chr11 (35651474-35652191)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-832, gnl\|bosTau2\|chr7 (53048212-53049056)
	1-832, gnl\|Hg17\|chr5 (167889816-167889026)
	1-832, gnl\|Mm7\|chr11 (35651474-35652191)