Non-Coding RNA Search

Ss1.1-recc2834c_i12.5

Sequence:


               
               CCGCAATCTCGCAGCCGCCGGTTACTGTGAGTCCGCGCCGTCCGGGGCCCGCCGCCGCGA
TATGTCACAAAAACCGAAGAGTCGCGGCCGCGCCGGCACCCAGGCAGAACGGGAGCGGGA
CTGGGGAGGAGGCGGCGGCGCAGAGGAGGTCCCGAGCACGTCCCGCGGGCCTTCCTCGCA
GGGCGGCCGGCGGGCCGAGGCCTCCCCAGCGCCGGGGCCCCGGTCGCAGAAGCAGCTGGA
GCTGAAGGTGGCCGAACTCGTGCAGTTCCTGCTGATCAAGGACCAGAGGAAGATCCCGAT
CCGGCGCACCGACATCCTGAAGCACGTGGTCGGAGACTATAAAGACGTCCTCCCGGAGCT
GCTCCGGCTGGCAGCCGAGCGCCTGGAGTACGTGTTCGGGTACCGGCTGGTAGAGCTGGA
GCCCCGGAGCAACACCTACATCCTGGTCAACACGCTGGAGCCGGTGGAGGAGGACGCCGA
GGTGCGCGGCGACCAGGGCACACCTACCACCGGGTTGCTGATGATCGTGCTGGGGCTCAT
CTTTATGAAAGGCAACAGCATCAAGGAGACGGAGGTCTGGGACTTTCTGCGGCGCCTCGG
GGTGCACCCCACCAAGAAGCACCTGATCTTCGGGGACCCCAAGAAGCTTATAACCGAGGA
CTTCGTGCGGCAGAGGTATCTGGAGTACCGGCGCATCCCCCACACTGATCCTGTGGACTA
CGAGCTCCAGTGGGGCCCACGCACCAACCTGGAGACCAGCAAGATGAAGGTGCTCAAGTT
CGTGGCCAAAGTCCACAATCAGGACCCCAAGGACTGGCCGGCTCAGTACTGTGAGGCTCT
GGCTGAGGAGGAGGCCAGGGCCAGACCCCCAACAGGTGGCCCAGCCCCTTCTTCTTGAAA
TCTGAGAGACTCAGAGGGACTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCAATCTCGCAGCCGCCGGTTACTGTGAGTCCGCGCCGTCCGGGGCCCGCCGCCGCGA
TATGTCACAAAAACCGAAGAGTCGCGGCCGCGCCGGCACCCAGGCAGAACGGGAGCGGGA
CTGGGGAGGAGGCGGCGGCGCAGAGGAGGTCCCGAGCACGTCCCGCGGGCCTTCCTCGCA
GGGCGGCCGGCGGGCCGAGGCCTCCCCAGCGCCGGGGCCCCGGTCGCAGAAGCAGCTGGA
GCTGAAGGTGGCCGAACTCGTGCAGTTCCTGCTGATCAAGGACCAGAGGAAGATCCCGAT
CCGGCGCACCGACATCCTGAAGCACGTGGTCGGAGACTATAAAGACGTCCTCCCGGAGCT
GCTCCGGCTGGCAGCCGAGCGCCTGGAGTACGTGTTCGGGTACCGGCTGGTAGAGCTGGA
GCCCCGGAGCAACACCTACATCCTGGTCAACACGCTGGAGCCGGTGGAGGAGGACGCCGA
GGTGCGCGGCGACCAGGGCACACCTACCACCGGGTTGCTGATGATCGTGCTGGGGCTCAT
CTTTATGAAAGGCAACAGCATCAAGGAGACGGAGGTCTGGGACTTTCTGCGGCGCCTCGG
GGTGCACCCCACCAAGAAGCACCTGATCTTCGGGGACCCCAAGAAGCTTATAACCGAGGA
CTTCGTGCGGCAGAGGTATCTGGAGTACCGGCGCATCCCCCACACTGATCCTGTGGACTA
CGAGCTCCAGTGGGGCCCACGCACCAACCTGGAGACCAGCAAGATGAAGGTGCTCAAGTT
CGTGGCCAAAGTCCACAATCAGGACCCCAAGGACTGGCCGGCTCAGTACTGTGAGGCTCT
GGCTGAGGAGGAGGCCAGGGCCAGACCCCCAACAGGTGGCCCAGCCCCTTCTTCTTGAAA
TCTGAGAGACTCAGAGGGACTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18676624|dbj|BAB84964.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18676624|dbj|BAB84964.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               495-614, - strand, RNAz p=0.52633

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               495-614, - strand, RNAz p=0.52633

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-882, gnl|bosTau2|chr21 (774715-775556)
               

               
               14-882, gnl|Hg17|chr15 (27349246-27348303)
               

               
               14-882, gnl|Mm7|chr7 (60730922-60730079)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-882, gnl|bosTau2|chr21 (774715-775556)
               

               
               14-882, gnl|Hg17|chr15 (27349246-27348303)
               

               
               14-882, gnl|Mm7|chr7 (60730922-60730079)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	14-882, gnl\|bosTau2\|chr21 (774715-775556)
	14-882, gnl\|Hg17\|chr15 (27349246-27348303)
	14-882, gnl\|Mm7\|chr7 (60730922-60730079)

	cmu (0.186393)
	nep (0.183925)
	pla (0.133672)
	ecc (0.115035)
	cty (0.10408)