Ss1.1-recc2834c_i23.5
|
TCCCTTTTGCGGCCATCGCTGAAGCGCCAGCGGCCAAAATGAAGTTCAATCCTTTTGTGA
CCTCCGACCGAAGCAAGAACCGTAAAAGGCATTTCAATGCACCTTCCCACATTCGCAGGA
AGATTATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTACAATGTTCGATCCATGC
CCATCCGAAAGGACGATGAAGTTCAGGTTGTACGAGGGCACTACAAGGGGCAGCAGATTG
GCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCATCTACATTGAACGAGTGCAGCGGG
AGAAGGCTAATGGCACAACTGTCCATGTGGGCATTCACCCCAGCAAGGTGGTTATCACTA
GACTAAAACTGGACAAGGACCGCAAAAAGATACTTGAACGTAAAGCCAAATCTCGCCAAG
TAGGAAAGGAAAAGGGAAAATATAAGGAAGAAACCATTGAGAAGATGCAGGAATAAAATA
ATCATGTATAGAACTTTCATTAAAAACCTAAAATGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCCCTTTTGCGGCCATCGCTGAAGCGCCAGCGGCCAAAATGAAGTTCAATCCTTTTGTGA
CCTCCGACCGAAGCAAGAACCGTAAAAGGCATTTCAATGCACCTTCCCACATTCGCAGGA
AGATTATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTACAATGTTCGATCCATGC
CCATCCGAAAGGACGATGAAGTTCAGGTTGTACGAGGGCACTACAAGGGGCAGCAGATTG
GCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTCATCTACATTGAACGAGTGCAGCGGG
AGAAGGCTAATGGCACAACTGTCCATGTGGGCATTCACCCCAGCAAGGTGGTTATCACTA
GACTAAAACTGGACAAGGACCGCAAAAAGATACTTGAACGTAAAGCCAAATCTCGCCAAG
TAGGAAAGGAAAAGGGAAAATATAAGGAAGAAACCATTGAGAAGATGCAGGAATAAAATA
ATCATGTATAGAACTTTCATTAAAAACCTAAAATGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
thg (4.43768) |
|
mgp (4.38293) |
|
sag (4.20245) |
|
ova (4.0031) |
|
rec (3.98062) |
|
cbe (3.82775) |
|
csk (3.80014) |
|
nca (3.28497) |
|
aor (3.12439) |
|
bfe (2.8473) |
|
elu (2.6975) |
|
isp (2.40601) |
|
eje (2.27318) |
|
med (2.20879) |
|
sme (2.13806) |
|
nlu (2.10849) |
|
lnt (1.99232) |
|
sto (1.97806) |
|
ese (1.89753) |
|
cmu (1.86393) |
|
pty (1.85529) |
|
fty (1.7584) |
|
nep (1.65532) |
|
mgm (1.62308) |
|
lyg (1.59723) |
|
jca (1.59544) |
|
spc (1.58712) |
|
ill (1.58033) |
|
eru (1.56062) |
|
kid (1.55682) |
|
hlv (1.53182) |
|
ecc (1.49546) |
|
nje (1.49328) |
|
mcp (1.36519) |
|
fce (1.35796) |
|
ssp (1.3552) |
|
vin (1.33023) |
|
fat (1.32685) |
|
gul (1.24312) |
|
duo (1.20961) |
|
eye (1.19352) |
|
col (1.17005) |
|
nco (1.13214) |
|
nms (1.06929) |
|
hea (1.02249) |
|
fli (1.0144) |
|
pgl (0.947867) |
|
ebs (0.94641) |
|
eli (0.910885) |
|
nbm (0.893921) |
|
ski (0.880411) |
|
mga (0.801025) |
|
ton (0.702001) |
|
fbs (0.701385) |
|
ece (0.687916) |
|
mas (0.630915) |
|
nmm (0.531209) |
|
bla (0.497389) |
|
eep (0.490256) |
|
cly (0.482567) |
|
lin (0.436808) |
|
spl (0.429553) |
|
ute (0.398353) |
|
sug (0.381874) |
|
cut (0.339847) |
|
fhi (0.339155) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
cst (0.280073) |
|
che (0.272628) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
sin (0.174948) |
|
cki (0.165235) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
lun (0.150489) |
|
ste (0.135208) |
|
cov (0.132153) |
|
tra (0.123092) |
|
thg (4.43768) |
|
mgp (4.38293) |
|
sag (4.20245) |
|
ova (4.0031) |
|
rec (3.98062) |
|
cbe (3.82775) |
|
csk (3.80014) |
|
nca (3.28497) |
|
aor (3.12439) |
|
bfe (2.8473) |
|
elu (2.6975) |
|
isp (2.40601) |
|
eje (2.27318) |
|
med (2.20879) |
|
sme (2.13806) |
|
nlu (2.10849) |
|
lnt (1.99232) |
|
sto (1.97806) |
|
ese (1.89753) |
|
cmu (1.86393) |
|
pty (1.85529) |
|
fty (1.7584) |
|
nep (1.65532) |
|
mgm (1.62308) |
|
lyg (1.59723) |
|
jca (1.59544) |
|
spc (1.58712) |
|
ill (1.58033) |
|
eru (1.56062) |
|
kid (1.55682) |
|
hlv (1.53182) |
|
ecc (1.49546) |
|
nje (1.49328) |
|
mcp (1.36519) |
|
fce (1.35796) |
|
ssp (1.3552) |
|
vin (1.33023) |
|
fat (1.32685) |
|
gul (1.24312) |
|
duo (1.20961) |
|
eye (1.19352) |
|
col (1.17005) |
|
nco (1.13214) |
|
nms (1.06929) |
|
hea (1.02249) |
|
fli (1.0144) |
|
pgl (0.947867) |
|
ebs (0.94641) |
|
eli (0.910885) |
|
nbm (0.893921) |
|
ski (0.880411) |
|
mga (0.801025) |
|
ton (0.702001) |
|
fbs (0.701385) |
|
ece (0.687916) |
|
mas (0.630915) |
|
nmm (0.531209) |
|
bla (0.497389) |
|
eep (0.490256) |
|
cly (0.482567) |
|
lin (0.436808) |
|
spl (0.429553) |
|
ute (0.398353) |
|
sug (0.381874) |
|
cut (0.339847) |
|
fhi (0.339155) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
cst (0.280073) |
|
che (0.272628) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
sin (0.174948) |
|
cki (0.165235) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
lun (0.150489) |
|
ste (0.135208) |
|
cov (0.132153) |
|
tra (0.123092) |
