Non-Coding RNA Search

Ss1.1-recc2834c_j4.5

Sequence:


               
               GTTCAATGGATTGGATGCCGTTTGAAAAACGTGACTGATTTATTACTGCATGGCTCCGGC
AGGAATGACAAAGCAGTGCTGTTTTAGTTTGGATTCTTCTGTAGCAGGAAATACCATTTA
GAGTCAGCCTCCCTTGCAGGCATGCCCTGGACGCTGGGCCAGTATCTATATATGTGTGTT
TGTGTGTGCGCGCGCACGCGTGCGCGCTTGTGTATGCTTGTAGCAAATATTTGGGAAGTA
TTCTTGCCTTGAGCCCAAGAGGGTCCTTCAGTACTCAAGAAGCAGCCTGGCTTTCAGCAG
CAGCACAGCTCTTATTTCCCTTCACCTAGCTGTCTAGAGAAGCTCACCAAAAGCTTGCAT
AGAGACATATAGGAAGTGGCGTGCTTAAGTTCGTATTTATTTGCAATCCACCTGCACTGA
AGGCAGTCAGTTATTTATACTCAACATACTGTACCTGTTCTTTACATGTGCTTAATGCTA
CCCTCCCTCTGAAACATATTTAAATTGTACTCTTAAGGCTTTCGCCTGGATTCTTAGAGT
TGTCTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCAATGGATTGGATGCCGTTTGAAAAACGTGACTGATTTATTACTGCATGGCTCCGGC
AGGAATGACAAAGCAGTGCTGTTTTAGTTTGGATTCTTCTGTAGCAGGAAATACCATTTA
GAGTCAGCCTCCCTTGCAGGCATGCCCTGGACGCTGGGCCAGTATCTATATATGTGTGTT
TGTGTGTGCGCGCGCACGCGTGCGCGCTTGTGTATGCTTGTAGCAAATATTTGGGAAGTA
TTCTTGCCTTGAGCCCAAGAGGGTCCTTCAGTACTCAAGAAGCAGCCTGGCTTTCAGCAG
CAGCACAGCTCTTATTTCCCTTCACCTAGCTGTCTAGAGAAGCTCACCAAAAGCTTGCAT
AGAGACATATAGGAAGTGGCGTGCTTAAGTTCGTATTTATTTGCAATCCACCTGCACTGA
AGGCAGTCAGTTATTTATACTCAACATACTGTACCTGTTCTTTACATGTGCTTAATGCTA
CCCTCCCTCTGAAACATATTTAAATTGTACTCTTAAGGCTTTCGCCTGGATTCTTAGAGT
TGTCTTTTTTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-531, gnl|bosTau2|chr6 (36550409-36549912)
               

               
               1-531, gnl|Hg17|chr4 (55446587-55447090)
               

               
               1-531, gnl|Mm7|chr5 (75073792-75074273)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-531, gnl|bosTau2|chr6 (36550409-36549912)
               

               
               1-531, gnl|Hg17|chr4 (55446587-55447090)
               

               
               1-531, gnl|Mm7|chr5 (75073792-75074273)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ecc (0.23007)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	1-531, gnl\|bosTau2\|chr6 (36550409-36549912)
	1-531, gnl\|Hg17\|chr4 (55446587-55447090)
	1-531, gnl\|Mm7\|chr5 (75073792-75074273)