Non-Coding RNA Search

Ss1.1-recc2834c_k3.5

Sequence:


               
               TTCCCTGTCACACGACCTTCCATGTTTTATTAAAGGGGACGCTGGTGGTGAGCCGCGTGT
GTGCGTGTCCCTGCTCTGCTGCTGCCCTCCTGGCTGCTCTCTGTCTGGCTGCCCCACCCC
CCTCAGGTGGCTTCCTCTCAGCCTTCCACCTGTCCACCCCCAAGCCTCCCCGCCAGGAGT
AGTTTTGAGGGGGCTAGGCCTCTTGGGGACCCCTCCTGGTTATTGGGCCTCTGCTTCCTT
CCCTTCAGGCCTCTGCCCCTGCCCTCCTTAGCCGGCCAGGCCTTCCAGGGGAATTTGGAA
GTTCCTTGGAGACTGGCCCAGAGCCCCAGGACCACCAAGGCTTCCAGCTCTGCCCTCATA
GGCCACGCCTCCGCCCTGCTGCCCTGGCCTCCCCGGCCACCTGCCCTCCATCAGGGGTCT
GCATGGTGGAGAGGGCTGGCCTGAGGGTGCGGCCTGGCTCAGGGTAGGCGGAGGAGCTGG
GCCGCCCTAGTGCACCCCAGGTGCTGCCCTCCGGGCGGGGGAGGGCTGTCCTCAAGCCTG
TCCTTCCCGGAGTCTAGCGGGGCTGGCCAGGCCCCCGTTCTTCCCCCACCCCACCACCCC
CTGCCTGTGCCTGCTTTGCATCCCCTCTGCTTGGGCCGCGGTGTCTGCGTTGCCTTCCTC
TCTTCACTTCCCCTGGCACATGTGGGGTCTCAGCCCCCAGGCTGTGAGCTCCTTGGGGGC
AGGCCCTCAATAAATGTGAAGTGCTGCCCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCTGTCACACGACCTTCCATGTTTTATTAAAGGGGACGCTGGTGGTGAGCCGCGTGT
GTGCGTGTCCCTGCTCTGCTGCTGCCCTCCTGGCTGCTCTCTGTCTGGCTGCCCCACCCC
CCTCAGGTGGCTTCCTCTCAGCCTTCCACCTGTCCACCCCCAAGCCTCCCCGCCAGGAGT
AGTTTTGAGGGGGCTAGGCCTCTTGGGGACCCCTCCTGGTTATTGGGCCTCTGCTTCCTT
CCCTTCAGGCCTCTGCCCCTGCCCTCCTTAGCCGGCCAGGCCTTCCAGGGGAATTTGGAA
GTTCCTTGGAGACTGGCCCAGAGCCCCAGGACCACCAAGGCTTCCAGCTCTGCCCTCATA
GGCCACGCCTCCGCCCTGCTGCCCTGGCCTCCCCGGCCACCTGCCCTCCATCAGGGGTCT
GCATGGTGGAGAGGGCTGGCCTGAGGGTGCGGCCTGGCTCAGGGTAGGCGGAGGAGCTGG
GCCGCCCTAGTGCACCCCAGGTGCTGCCCTCCGGGCGGGGGAGGGCTGTCCTCAAGCCTG
TCCTTCCCGGAGTCTAGCGGGGCTGGCCAGGCCCCCGTTCTTCCCCCACCCCACCACCCC
CTGCCTGTGCCTGCTTTGCATCCCCTCTGCTTGGGCCGCGGTGTCTGCGTTGCCTTCCTC
TCTTCACTTCCCCTGGCACATGTGGGGTCTCAGCCCCCAGGCTGTGAGCTCCTTGGGGGC
AGGCCCTCAATAAATGTGAAGTGCTGCCCAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               107-385, - strand, RNAz p=0.994568

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-385, - strand, RNAz p=0.994568

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               175-250, + strand, RNAmicro p=0.999792

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               175-250, + strand, RNAmicro p=0.999792

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-605, gnl|bosTau2|chr29 (35140230-35140820)
               

               
               1-605, gnl|Hg17|chr11 (63521697-63522382)
               

               
               1-605, gnl|Mm7|chr19 (7018757-7018147)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-605, gnl|bosTau2|chr29 (35140230-35140820)
               

               
               1-605, gnl|Hg17|chr11 (63521697-63522382)
               

               
               1-605, gnl|Mm7|chr19 (7018757-7018147)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-605, gnl\|bosTau2\|chr29 (35140230-35140820)
	1-605, gnl\|Hg17\|chr11 (63521697-63522382)
	1-605, gnl\|Mm7\|chr19 (7018757-7018147)