Non-Coding RNA Search

Ss1.1-recc2834c_l10.5

Sequence:


               
               TCACCTTCACCTTTCTGTCGGCCAAGTGCCTTCGGGGGCACGCGGACGGGGGTGGGGGTG
GGGGCCGGTGCTGTGGGCGCCCGGACTCGCCCTCCCGGGAGTTCTATAAGCAGTCCAGCC
CCAACCTGCAGGTGAGCTCAGACGGCACGCTCAAGTACATGGAGGTGACGCTGCGGCCCA
CGGACTCGCACGGCCACTGCTATCGGACGTGCTTTTCCCCAGCCTCCGACGGCAGTGACT
TCACTTTTCTAAGGCCGCTCAGCGTCCAGCAGCCCTCAGCTCTGGCGCCGGAGCCCGACG
CCTTCCGGTCCCGCTCTAGCACGCTGCTGGAGCGGAGCCAGGTGAGGGGCCCGACGCAAC
CCCCGGGGGCGCCGCCGGTGGAGGAGTCGCTCAGCCACATCAGGGACTTGGAACTTGCAT
CCACTCTGCTGGTGCGGGCTGGGCCCGAATGTCAGGACTTTGTTTGGACGGATGGCGCCG
AACTAGAGGTGTGGCCCAGGCAGGGGTGGGGTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCTTCACCTTTCTGTCGGCCAAGTGCCTTCGGGGGCACGCGGACGGGGGTGGGGGTG
GGGGCCGGTGCTGTGGGCGCCCGGACTCGCCCTCCCGGGAGTTCTATAAGCAGTCCAGCC
CCAACCTGCAGGTGAGCTCAGACGGCACGCTCAAGTACATGGAGGTGACGCTGCGGCCCA
CGGACTCGCACGGCCACTGCTATCGGACGTGCTTTTCCCCAGCCTCCGACGGCAGTGACT
TCACTTTTCTAAGGCCGCTCAGCGTCCAGCAGCCCTCAGCTCTGGCGCCGGAGCCCGACG
CCTTCCGGTCCCGCTCTAGCACGCTGCTGGAGCGGAGCCAGGTGAGGGGCCCGACGCAAC
CCCCGGGGGCGCCGCCGGTGGAGGAGTCGCTCAGCCACATCAGGGACTTGGAACTTGCAT
CCACTCTGCTGGTGCGGGCTGGGCCCGAATGTCAGGACTTTGTTTGGACGGATGGCGCCG
AACTAGAGGTGTGGCCCAGGCAGGGGTGGGGTTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-359, - strand, RNAz p=0.938188

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-359, - strand, RNAz p=0.938188

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               283-359, + strand, RNAmicro p=0.997893
               

               
               172-308, - strand, RNAmicro p=0.992853

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               283-359, + strand, RNAmicro p=0.997893
               

               
               172-308, - strand, RNAmicro p=0.992853

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr7 (35319243-35319754)
               

               
               1-516, gnl|Hg17|chr5 (140851111-140851642)
               

               
               1-516, gnl|Mm7|chr18 (38197995-38198509)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr7 (35319243-35319754)
               

               
               1-516, gnl|Hg17|chr5 (140851111-140851642)
               

               
               1-516, gnl|Mm7|chr18 (38197995-38198509)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.23007)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)

	283-359, + strand, RNAmicro p=0.997893
	172-308, - strand, RNAmicro p=0.992853

	1-516, gnl\|bosTau2\|chr7 (35319243-35319754)
	1-516, gnl\|Hg17\|chr5 (140851111-140851642)
	1-516, gnl\|Mm7\|chr18 (38197995-38198509)