Non-Coding RNA Search

Ss1.1-recc2834c_o5.5

Sequence:


               
               CTTCCATATGCTGCAGGTGCAGTCCTTAAAAAAAAAGCAAAATGAATAACGTAAATAAAA
TGAAAGCTTCACTAGGACTTAAATTGTCCTAGAGACAGTGCTTCCTAAGCTTTCAAGGTT
TTTTTTTTTTTAATATCTTCAAGGTTTTTTTACATGAGTGCTTTATATATAGAGCACTTA
TTGAAATGGCAAAATAATTATTGTGGAACTTTGAGATGGGAAGTTAATTAGGGATAAATG
ATTTGAGTTTTACTTGTTGAAATTTGCTGGGTTTGTCTACAGTTTTTTTCCTACCAATAT
AAAACCAAAATGGCTATAGCTAAGTACCTCAGAAGTTGACAACCCTATATACTGAGTAAT
AATGAATTTGAACTACCGTAATTAAGTTTGCATATAGGCAATTGCAGTATGGAAAAACTG
AGCCAATGACCACATCTCTTAGGTCTTAAAACTTAGGGTTTTTCTTCCCAGTATAAGCTG
TTAAGAGTGAGTTTAAAGGAATTTGAATTGAGTGATAATCTAATAAAATATACAGAAACA
AGTGGTATTATGTTAATTGGCAAGAAATTCTCAGAATTGATACTAAAGTAGGAGATTTCA
TTTAAAGTACATGCTTTCAAGAAAGAATTCTTAAGTACTTTCACAAGAATCTTACCAGTT
TTAATTGTTTGCTTTTTTTGCTTAGATAATAGCCAGTGAACTCTGGACAAGTTTCTAATT
TTTACCCTTGTTTTATAGTTGTCACTCAACCCAGTCCATCAGTTTCTCAGCCCAGTACTT
CTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCATATGCTGCAGGTGCAGTCCTTAAAAAAAAAGCAAAATGAATAACGTAAATAAAA
TGAAAGCTTCACTAGGACTTAAATTGTCCTAGAGACAGTGCTTCCTAAGCTTTCAAGGTT
TTTTTTTTTTTAATATCTTCAAGGTTTTTTTACATGAGTGCTTTATATATAGAGCACTTA
TTGAAATGGCAAAATAATTATTGTGGAACTTTGAGATGGGAAGTTAATTAGGGATAAATG
ATTTGAGTTTTACTTGTTGAAATTTGCTGGGTTTGTCTACAGTTTTTTTCCTACCAATAT
AAAACCAAAATGGCTATAGCTAAGTACCTCAGAAGTTGACAACCCTATATACTGAGTAAT
AATGAATTTGAACTACCGTAATTAAGTTTGCATATAGGCAATTGCAGTATGGAAAAACTG
AGCCAATGACCACATCTCTTAGGTCTTAAAACTTAGGGTTTTTCTTCCCAGTATAAGCTG
TTAAGAGTGAGTTTAAAGGAATTTGAATTGAGTGATAATCTAATAAAATATACAGAAACA
AGTGGTATTATGTTAATTGGCAAGAAATTCTCAGAATTGATACTAAAGTAGGAGATTTCA
TTTAAAGTACATGCTTTCAAGAAAGAATTCTTAAGTACTTTCACAAGAATCTTACCAGTT
TTAATTGTTTGCTTTTTTTGCTTAGATAATAGCCAGTGAACTCTGGACAAGTTTCTAATT
TTTACCCTTGTTTTATAGTTGTCACTCAACCCAGTCCATCAGTTTCTCAGCCCAGTACTT
CTCAAAGTGAAGAAAAAGCTCCTGAGTTGCCCAAACCAAAGAAGAACA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               64-528, gnl|bosTau2|chr9 (28571085-28571548)
               

               
               64-528, gnl|Hg17|chr9 (72202199-72201672)
               


               
               578-828, gnl|bosTau2|chr9 (28571533-28571790)
               

               
               578-828, gnl|Hg17|chr9 (72201760-72201437)
               

               
               578-828, gnl|Mm7|chr19 (20977635-20977847)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-528, gnl|bosTau2|chr9 (28571085-28571548)
               

               
               64-528, gnl|Hg17|chr9 (72202199-72201672)
               


               
               578-828, gnl|bosTau2|chr9 (28571533-28571790)
               

               
               578-828, gnl|Hg17|chr9 (72201760-72201437)
               

               
               578-828, gnl|Mm7|chr19 (20977635-20977847)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ecc (0.115035)

	64-528, gnl\|bosTau2\|chr9 (28571085-28571548)
	64-528, gnl\|Hg17\|chr9 (72202199-72201672)

	578-828, gnl\|bosTau2\|chr9 (28571533-28571790)
	578-828, gnl\|Hg17\|chr9 (72201760-72201437)
	578-828, gnl\|Mm7\|chr19 (20977635-20977847)