Non-Coding RNA Search

Ss1.1-recc2835c_e12.5

Sequence:


               
               GGCAGAGTGTGGAGACCTTCTGGAGTAGTGTAGACGAAGGCCCTGAGGGCACCGAACCAG
CTCCGATCTCCTTAGGGAACAGATGGGGAATCACCTGAGCCAGATCCGAAATGGGGCTCA
GGGTTAAGAGGCAGGGTCACCCAGGAACTGGTTTAGGTCCTGGCGACTCTTGAAGGGTTG
GGGAGGCTGGCAGGGGGCACTGAGAGCCCTGGGCTCCGGGCCAGGTGGTGAATTACAGTG
ACTCAAGGACGGCAGAAGAGATCTGTGAGAGCAGCTCCAAGATGATCACCTTCATCGACC
TGGCAGGCCACCACAAGTACCTGCACACCACCATCTTCGGCCTCACCTCGTACTGTCCCG
ACTGCGCCCTGCTGCTCGTCAGCGCCAACACTGGCATTGGTACGAGGCATCGGGCAGGGA
TGGCGCTGGATGGGGGTGCTGACTCTCCTAGCCCGGACCTCCCCAGATCTGGGAGGCAGC
CCCACTCGTCTCTTGCTCTGTCCTCCTCCCTGCCTTCTCACCCCTCGTCCCGCTGCCTGC
CTTCTTTCTCTGAGCAGCTGGCACCACAAGGGAACATCTGGGGCTGGCCCTGGCCCTGAA
AGTGCCCTTCTTCATCGTGGTCAGCAAGGTGGACCTGTGCGCCAAGACCACCGTGGAGAG
GACGGTACGCCAGCTAGAGCGGGTCCTCAAGCAGCCTGGCTGCCACAAGGTCCCCATGCT
CGTCACCTCCGAGGATGATGCTGTCACGGCTGCCCAGCAGTTTGCCCAGTCCCCCAATGT
CACCCCTATCTTCACACTGCCGAGCGTGTCTGGAGAGAGTCTGGATCTGCTCAAAGACTT
TCTGAATATTCTGCCGCCACTCACCAATAGCAAAGAGCAGGAAGAACTCATGCAGCAGCT
GACAGAGTTCCATGTGGATGAAATCTACACAGTTCCAGAGGTGGTGACAGTTGTCAGAAG
AACGCTTTCCAGTGGCATTTGCCATGAGGGGGACCAGCTGATGGTGGGCCCCACAGACGA
TGGCTGCTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGAGTGTGGAGACCTTCTGGAGTAGTGTAGACGAAGGCCCTGAGGGCACCGAACCAG
CTCCGATCTCCTTAGGGAACAGATGGGGAATCACCTGAGCCAGATCCGAAATGGGGCTCA
GGGTTAAGAGGCAGGGTCACCCAGGAACTGGTTTAGGTCCTGGCGACTCTTGAAGGGTTG
GGGAGGCTGGCAGGGGGCACTGAGAGCCCTGGGCTCCGGGCCAGGTGGTGAATTACAGTG
ACTCAAGGACGGCAGAAGAGATCTGTGAGAGCAGCTCCAAGATGATCACCTTCATCGACC
TGGCAGGCCACCACAAGTACCTGCACACCACCATCTTCGGCCTCACCTCGTACTGTCCCG
ACTGCGCCCTGCTGCTCGTCAGCGCCAACACTGGCATTGGTACGAGGCATCGGGCAGGGA
TGGCGCTGGATGGGGGTGCTGACTCTCCTAGCCCGGACCTCCCCAGATCTGGGAGGCAGC
CCCACTCGTCTCTTGCTCTGTCCTCCTCCCTGCCTTCTCACCCCTCGTCCCGCTGCCTGC
CTTCTTTCTCTGAGCAGCTGGCACCACAAGGGAACATCTGGGGCTGGCCCTGGCCCTGAA
AGTGCCCTTCTTCATCGTGGTCAGCAAGGTGGACCTGTGCGCCAAGACCACCGTGGAGAG
GACGGTACGCCAGCTAGAGCGGGTCCTCAAGCAGCCTGGCTGCCACAAGGTCCCCATGCT
CGTCACCTCCGAGGATGATGCTGTCACGGCTGCCCAGCAGTTTGCCCAGTCCCCCAATGT
CACCCCTATCTTCACACTGCCGAGCGTGTCTGGAGAGAGTCTGGATCTGCTCAAAGACTT
TCTGAATATTCTGCCGCCACTCACCAATAGCAAAGAGCAGGAAGAACTCATGCAGCAGCT
GACAGAGTTCCATGTGGATGAAATCTACACAGTTCCAGAGGTGGTGACAGTTGTCAGAAG
AACGCTTTCCAGTGGCATTTGCCATGAGGGGGACCAGCTGATGGTGGGCCCCACAGACGA
TGGCTGCTTCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               194-313, - strand, RNAz p=0.73711
               

               
               549-668, + strand, RNAz p=0.648353

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-313, - strand, RNAz p=0.73711
               

               
               549-668, + strand, RNAz p=0.648353

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               616-751, - strand, RNAmicro p=0.956728
               

               
               613-679, + strand, RNAmicro p=0.914813

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               616-751, - strand, RNAmicro p=0.956728
               

               
               613-679, + strand, RNAmicro p=0.914813

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-777, gnl|bosTau2|chr23 (16099898-16099143)
               

               
               1-777, gnl|Hg17|chr6 (43701002-43700225)
               

               
               1-777, gnl|Mm7|chr17 (44294666-44295401)
               


               
               780-915, gnl|bosTau2|chr23 (16098719-16098584)
               

               
               780-915, gnl|canFam2|chr12 (15079847-15079984)
               

               
               780-915, gnl|danRer3|chr22 (42168664-42168529)
               

               
               780-915, gnl|echTel1|scaffold_280481 (34865-35002)
               

               
               780-915, gnl|fr1|chrUn (266647597-266647732)
               

               
               780-915, gnl|galGal2|chr3 (27169395-27169263)
               

               
               780-915, gnl|hg17|chr6 (43699641-43699778)
               

               
               780-915, gnl|Hg17|chr6 (43699781-43699646)
               

               
               780-915, gnl|loxAfr1|scaffold_7045 (76334-76470)
               

               
               780-915, gnl|mm7|chr17 (44295858-44295722)
               

               
               780-915, gnl|Mm7|chr17 (44295717-44295852)
               

               
               780-915, gnl|monDom2|scaffold_0 (197901185-197901049)
               

               
               780-915, gnl|oryCun1|scaffold_211361 (24838-24971)
               

               
               780-915, gnl|panTro1|chr5 (44298773-44298910)
               

               
               780-915, gnl|rheMac2|chr4 (43524450-43524587)
               

               
               780-915, gnl|rn3|chr9 (10377979-10378115)
               

               
               780-915, gnl|tetNig1|chr17 (6482260-6482395)
               

               
               780-915, gnl|xenTro1|scaffold_325 (131477-131599)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-777, gnl|bosTau2|chr23 (16099898-16099143)
               

               
               1-777, gnl|Hg17|chr6 (43701002-43700225)
               

               
               1-777, gnl|Mm7|chr17 (44294666-44295401)
               


               
               780-915, gnl|bosTau2|chr23 (16098719-16098584)
               

               
               780-915, gnl|canFam2|chr12 (15079847-15079984)
               

               
               780-915, gnl|danRer3|chr22 (42168664-42168529)
               

               
               780-915, gnl|echTel1|scaffold_280481 (34865-35002)
               

               
               780-915, gnl|fr1|chrUn (266647597-266647732)
               

               
               780-915, gnl|galGal2|chr3 (27169395-27169263)
               

               
               780-915, gnl|hg17|chr6 (43699641-43699778)
               

               
               780-915, gnl|Hg17|chr6 (43699781-43699646)
               

               
               780-915, gnl|loxAfr1|scaffold_7045 (76334-76470)
               

               
               780-915, gnl|mm7|chr17 (44295858-44295722)
               

               
               780-915, gnl|Mm7|chr17 (44295717-44295852)
               

               
               780-915, gnl|monDom2|scaffold_0 (197901185-197901049)
               

               
               780-915, gnl|oryCun1|scaffold_211361 (24838-24971)
               

               
               780-915, gnl|panTro1|chr5 (44298773-44298910)
               

               
               780-915, gnl|rheMac2|chr4 (43524450-43524587)
               

               
               780-915, gnl|rn3|chr9 (10377979-10378115)
               

               
               780-915, gnl|tetNig1|chr17 (6482260-6482395)
               

               
               780-915, gnl|xenTro1|scaffold_325 (131477-131599)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	194-313, - strand, RNAz p=0.73711
	549-668, + strand, RNAz p=0.648353

	616-751, - strand, RNAmicro p=0.956728
	613-679, + strand, RNAmicro p=0.914813

	1-777, gnl\|bosTau2\|chr23 (16099898-16099143)
	1-777, gnl\|Hg17\|chr6 (43701002-43700225)
	1-777, gnl\|Mm7\|chr17 (44294666-44295401)

	780-915, gnl\|bosTau2\|chr23 (16098719-16098584)
	780-915, gnl\|canFam2\|chr12 (15079847-15079984)
	780-915, gnl\|danRer3\|chr22 (42168664-42168529)
	780-915, gnl\|echTel1\|scaffold_280481 (34865-35002)
	780-915, gnl\|fr1\|chrUn (266647597-266647732)
	780-915, gnl\|galGal2\|chr3 (27169395-27169263)
	780-915, gnl\|hg17\|chr6 (43699641-43699778)
	780-915, gnl\|Hg17\|chr6 (43699781-43699646)
	780-915, gnl\|loxAfr1\|scaffold_7045 (76334-76470)
	780-915, gnl\|mm7\|chr17 (44295858-44295722)
	780-915, gnl\|Mm7\|chr17 (44295717-44295852)
	780-915, gnl\|monDom2\|scaffold_0 (197901185-197901049)
	780-915, gnl\|oryCun1\|scaffold_211361 (24838-24971)
	780-915, gnl\|panTro1\|chr5 (44298773-44298910)
	780-915, gnl\|rheMac2\|chr4 (43524450-43524587)
	780-915, gnl\|rn3\|chr9 (10377979-10378115)
	780-915, gnl\|tetNig1\|chr17 (6482260-6482395)
	780-915, gnl\|xenTro1\|scaffold_325 (131477-131599)