Ss1.1-recc2835c_j10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGGGCGCGGGGTGGAGTCCCCTCTCGATCCCGTGGTGCTCCGCGGCAGGGTCGCGCT CTCTTCCGGTCGCGGGCAGCCGGGGCGTAGAGGGCGGTCGCGACAGGCGCCGAGGCAGTG CTGAGCGACCGAGGCAGGATGTTGGCTACCAGAGTATTTAACCTCATTGGCAGGCGAGCA ATTTCCACCTCGGTGTGTGTGCGAGCACATGGAAGCGTCGTGAAGAGTGAGGACTACGCC CTCCCGGTCTACGTCGACCGGCGCGACTACCCCTTGCCCGACGTGGCCCACGTCAAGAAC CTCTCCGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCC ATGGATGAGAAAGTGGAACTGTACCGCCTGAAGTTCAACGAGAGCTTCGCCGAGATGAAC AGGAGCACGAACGAGTGGAAGACGATCGTGGGCACCGCGCTGTTCTTCATCGGCTTCACC GCCCTCCTCCTCATCTGGGAGAAGCACTATGTGTACGGCCCCATCCCGCACACCTTTGAG GAGGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGGCCCCCATCCAG GGCTTCTCGGCCAAGTGGGACTACGACAAGAACGAGTGGAAGAAGTGAGGCCCGACCCCA CCTGTCCTGTCGCCGCCCTGCAGCGCAGCGCCTTGGCTGCGCACCGTCACGTGACACGAC CAGTGCTAATAAACGAGCAGGTGACCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGGGCGCGGGGTGGAGTCCCCTCTCGATCCCGTGGTGCTCCGCGGCAGGGTCGCGCT CTCTTCCGGTCGCGGGCAGCCGGGGCGTAGAGGGCGGTCGCGACAGGCGCCGAGGCAGTG CTGAGCGACCGAGGCAGGATGTTGGCTACCAGAGTATTTAACCTCATTGGCAGGCGAGCA ATTTCCACCTCGGTGTGTGTGCGAGCACATGGAAGCGTCGTGAAGAGTGAGGACTACGCC CTCCCGGTCTACGTCGACCGGCGCGACTACCCCTTGCCCGACGTGGCCCACGTCAAGAAC CTCTCCGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCC ATGGATGAGAAAGTGGAACTGTACCGCCTGAAGTTCAACGAGAGCTTCGCCGAGATGAAC AGGAGCACGAACGAGTGGAAGACGATCGTGGGCACCGCGCTGTTCTTCATCGGCTTCACC GCCCTCCTCCTCATCTGGGAGAAGCACTATGTGTACGGCCCCATCCCGCACACCTTTGAG GAGGAGTGGGTGGCCAAGCAGACCAAGAGGATGCTGGACATGAAGGTGGCCCCCATCCAG GGCTTCTCGGCCAAGTGGGACTACGACAAGAACGAGTGGAAGAAGTGAGGCCCGACCCCA CCTGTCCTGTCGCCGCCCTGCAGCGCAGCGCCTTGGCTGCGCACCGTCACGTGACACGAC CAGTGCTAATAAACGAGCAGGTGACCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr18 (8045912-8046017) | |
| 1-107, gnl|Hg17|chr16 (84390744-84390847) | |
| 1-107, gnl|Mm7|chr8 (119303184-119303308) | |
| 211-379, gnl|bosTau2|chr18 (8050992-8051160) | |
| 211-379, gnl|canFam2|chr5 (69886084-69885979) | |
| 211-379, gnl|danRer3|chr18 (30376817-30376690) | |
| 211-379, gnl|dasNov1|scaffold_13841 (12147-12040) | |
| 211-379, gnl|echTel1|scaffold_316305 (3638-3742) | |
| 211-379, gnl|fr1|chrUn (122976667-122976772) | |
| 211-379, gnl|galGal2|chr11 (17966759-17966862) | |
| 211-379, gnl|hg17|chr16 (84396040-84396145) | |
| 211-379, gnl|Hg17|chr16 (84396043-84396211) | |
| 211-379, gnl|loxAfr1|scaffold_28202 (17394-17289) | |
| 211-379, gnl|mm7|chr8 (119307697-119307800) | |
| 211-379, gnl|Mm7|chr8 (119307698-119307866) | |
| 211-379, gnl|monDom2|scaffold_23 (13797335-13797230) | |
| 211-379, gnl|oryCun1|scaffold_119473 (1000-895) | |
| 211-379, gnl|panTro1|chr18_random (41784369-41784264) | |
| 211-379, gnl|rheMac2|chr20 (83969798-83969903) | |
| 211-379, gnl|rn3|chr19 (51033280-51033383) | |
| 211-379, gnl|xenTro1|scaffold_1158 (212106-212211) | |
| 511-745, gnl|bosTau2|chr18 (8053375-8053624) | |
| 511-745, gnl|Hg17|chr16 (84397844-84398103) | |
| 511-745, gnl|Mm7|chr8 (119308944-119309177) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr18 (8045912-8046017) | |
| 1-107, gnl|Hg17|chr16 (84390744-84390847) | |
| 1-107, gnl|Mm7|chr8 (119303184-119303308) | |
| 211-379, gnl|bosTau2|chr18 (8050992-8051160) | |
| 211-379, gnl|canFam2|chr5 (69886084-69885979) | |
| 211-379, gnl|danRer3|chr18 (30376817-30376690) | |
| 211-379, gnl|dasNov1|scaffold_13841 (12147-12040) | |
| 211-379, gnl|echTel1|scaffold_316305 (3638-3742) | |
| 211-379, gnl|fr1|chrUn (122976667-122976772) | |
| 211-379, gnl|galGal2|chr11 (17966759-17966862) | |
| 211-379, gnl|hg17|chr16 (84396040-84396145) | |
| 211-379, gnl|Hg17|chr16 (84396043-84396211) | |
| 211-379, gnl|loxAfr1|scaffold_28202 (17394-17289) | |
| 211-379, gnl|mm7|chr8 (119307697-119307800) | |
| 211-379, gnl|Mm7|chr8 (119307698-119307866) | |
| 211-379, gnl|monDom2|scaffold_23 (13797335-13797230) | |
| 211-379, gnl|oryCun1|scaffold_119473 (1000-895) | |
| 211-379, gnl|panTro1|chr18_random (41784369-41784264) | |
| 211-379, gnl|rheMac2|chr20 (83969798-83969903) | |
| 211-379, gnl|rn3|chr19 (51033280-51033383) | |
| 211-379, gnl|xenTro1|scaffold_1158 (212106-212211) | |
| 511-745, gnl|bosTau2|chr18 (8053375-8053624) | |
| 511-745, gnl|Hg17|chr16 (84397844-84398103) | |
| 511-745, gnl|Mm7|chr8 (119308944-119309177) |
| Expressed library(ies): 64 entry(ies) | More info |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
| hlv (6.54505) | |
| nms (3.42173) | |
| ton (2.457) | |
| mas (2.31335) | |
| ill (2.10711) | |
| cov (1.85014) | |
| fcc (1.78006) | |
| cag (1.66314) | |
| nje (1.6592) | |
| nep (1.65532) | |
| col (1.56006) | |
| csp (1.45068) | |
| duo (1.38241) | |
| jca (1.36752) | |
| nlu (1.34177) | |
| cly (1.32706) | |
| ese (1.26502) | |
| fce (1.08637) | |
| ssp (1.08416) | |
| fbs (1.05208) | |
| med (1.04627) | |
| hyp (0.999857) | |
| cst (0.980255) | |
| jej (0.890296) | |
| mcp (0.853242) | |
| eye (0.852515) | |
| fhi (0.847889) | |
| ebs (0.828108) | |
| nca (0.821243) | |
| ecc (0.805246) | |
| eje (0.79067) | |
| lnt (0.711541) | |
| fty (0.703359) | |
| nbm (0.695272) | |
| ece (0.687916) | |
| eep (0.61282) | |
| fli (0.608643) | |
| eli (0.607257) | |
| pty (0.570858) | |
| cga (0.558191) | |
| nco (0.485201) | |
| amn (0.417711) | |
| hea (0.408998) | |
| che (0.408942) | |
| nmm (0.398406) | |
| eru (0.360144) | |
| cut (0.339847) | |
| cli (0.305623) | |
| sme (0.305437) | |
| ste (0.270416) | |
| ute (0.265569) | |
| pgl (0.236967) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cki (0.165235) | |
| cje (0.165235) | |
| lun (0.150489) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (6.54505) | |
| nms (3.42173) | |
| ton (2.457) | |
| mas (2.31335) | |
| ill (2.10711) | |
| cov (1.85014) | |
| fcc (1.78006) | |
| cag (1.66314) | |
| nje (1.6592) | |
| nep (1.65532) | |
| col (1.56006) | |
| csp (1.45068) | |
| duo (1.38241) | |
| jca (1.36752) | |
| nlu (1.34177) | |
| cly (1.32706) | |
| ese (1.26502) | |
| fce (1.08637) | |
| ssp (1.08416) | |
| fbs (1.05208) | |
| med (1.04627) | |
| hyp (0.999857) | |
| cst (0.980255) | |
| jej (0.890296) | |
| mcp (0.853242) | |
| eye (0.852515) | |
| fhi (0.847889) | |
| ebs (0.828108) | |
| nca (0.821243) | |
| ecc (0.805246) | |
| eje (0.79067) | |
| lnt (0.711541) | |
| fty (0.703359) | |
| nbm (0.695272) | |
| ece (0.687916) | |
| eep (0.61282) | |
| fli (0.608643) | |
| eli (0.607257) | |
| pty (0.570858) | |
| cga (0.558191) | |
| nco (0.485201) | |
| amn (0.417711) | |
| hea (0.408998) | |
| che (0.408942) | |
| nmm (0.398406) | |
| eru (0.360144) | |
| cut (0.339847) | |
| cli (0.305623) | |
| sme (0.305437) | |
| ste (0.270416) | |
| ute (0.265569) | |
| pgl (0.236967) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cki (0.165235) | |
| cje (0.165235) | |
| lun (0.150489) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| spc (0.113366) |