Non-Coding RNA Search

Ss1.1-recc2835c_l13.5

Sequence:


               
               GGCACGAGGAGCACTTTGAGTGTGAAGTCATAGGTGACGAAAGAAATTGGTGAACTTACA
TGCATACCAAGCTGATACTTGAATCATCTGAAAGTGGTACTTTATAGTTTCTNCCATTAC
TTTTAGGTTGCCTTTTTCAATTAATTTATGACCCTGTAATTCCCCTGCCCCCAAATTGGT
ACAGAAAGATTCATGACAAAAATAGTCACATACATTTATGTTGGTTCTTGTTTTTGCTTC
AGTGAAAACTCTAAATGTGTTTAAAGTATCTCTAATAAGTAGAAAACACTACAGTGTTCT
AGAAACCACTCGTTCTGAGTCATTCATAAACCTTGTCTATGAAATGACTTAAGTGCTTAA
TTGATAGGTTGCTCTGGGCAGCAGGGACGTAGTAAGCTCCTTTTTTATGCTAAAATAAAG
GAGCATCTGTCTGGTCCATTTGGAAAATTTGCTGTCAGCTACATGTAGTGATGGTAGTAG
TGGTGCAATAGTGAGGGTGGACTTTGTTGCCGAGTGTCTTGATGCCTTGAGGCCTGTGCA
GGTCTTCAGAACCCTGATTTGCTGTCAAGGATGTGTAGTGTTTTGCAGTTCTCAACCAAA
TGCTGGCCCTCCACTTTAGGCTATATTTTTCTAGTAAGAAAAAAGTATAACTCATTTATT
ATCTGACAGTTATAGAATATCTGTAACTCCCTAATTATTGGTTCTAAATTAAAAAAAAAT
TTACCCCTGATTTAGTGGGGGTTTGGGGTGGGGGAGGGTTTTGGTTTTGGTGATGGTGTT
GCATAGTATATGTTCTAGGAATATACTCTTAAATTTGCCATCTTGAATGCTGTTCCTGGA
GGATATTGTCTTCATAAACTTAGAATGATGAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACGAGGAGCACTTTGAGTGTGAAGTCATAGGTGACGAAAGAAATTGGTGAACTTACA
TGCATACCAAGCTGATACTTGAATCATCTGAAAGTGGTACTTTATAGTTTCTNCCATTAC
TTTTAGGTTGCCTTTTTCAATTAATTTATGACCCTGTAATTCCCCTGCCCCCAAATTGGT
ACAGAAAGATTCATGACAAAAATAGTCACATACATTTATGTTGGTTCTTGTTTTTGCTTC
AGTGAAAACTCTAAATGTGTTTAAAGTATCTCTAATAAGTAGAAAACACTACAGTGTTCT
AGAAACCACTCGTTCTGAGTCATTCATAAACCTTGTCTATGAAATGACTTAAGTGCTTAA
TTGATAGGTTGCTCTGGGCAGCAGGGACGTAGTAAGCTCCTTTTTTATGCTAAAATAAAG
GAGCATCTGTCTGGTCCATTTGGAAAATTTGCTGTCAGCTACATGTAGTGATGGTAGTAG
TGGTGCAATAGTGAGGGTGGACTTTGTTGCCGAGTGTCTTGATGCCTTGAGGCCTGTGCA
GGTCTTCAGAACCCTGATTTGCTGTCAAGGATGTGTAGTGTTTTGCAGTTCTCAACCAAA
TGCTGGCCCTCCACTTTAGGCTATATTTTTCTAGTAAGAAAAAAGTATAACTCATTTATT
ATCTGACAGTTATAGAATATCTGTAACTCCCTAATTATTGGTTCTAAATTAAAAAAAAAT
TTACCCCTGATTTAGTGGGGGTTTGGGGTGGGGGAGGGTTTTGGTTTTGGTGATGGTGTT
GCATAGTATATGTTCTAGGAATATACTCTTAAATTTGCCATCTTGAATGCTGTTCCTGGA
GGATATTGTCTTCATAAACTTAGAATGATGAAATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-350, - strand, RNAz p=0.715385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-350, - strand, RNAz p=0.715385

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-876, gnl|bosTau2|chr1 (11028217-11027373)
               

               
               11-876, gnl|Hg17|chr21 (17860165-17860976)
               

               
               11-876, gnl|Mm7|chr16 (78333984-78334940)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-876, gnl|bosTau2|chr1 (11028217-11027373)
               

               
               11-876, gnl|Hg17|chr21 (17860165-17860976)
               

               
               11-876, gnl|Mm7|chr16 (78333984-78334940)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               ecc (0.115035)

	11-876, gnl\|bosTau2\|chr1 (11028217-11027373)
	11-876, gnl\|Hg17\|chr21 (17860165-17860976)
	11-876, gnl\|Mm7\|chr16 (78333984-78334940)