Ss1.1-recc2835c_m9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAATGAAGAATAAAATGCCGGGAGTATGTTGATATTAAATTATGAAACATAAATTAACA TGACGTAGTGTCAGTATGAAATACTTCAATTAGTCAAATTAAGACTTACATATTTATTAT GTAATTCAAGGAAAAACACTTATTCGTCTTTAAAAATACCTATATATATATATATATCAA GGAGGGGAGTAGGGGGGGAAATGGAGCTCCATATTTTTGTGATGACCTAAAATAGAGAAG AAAGATTCTTTCCAATATAAGACACTCTCTGTTATTTTAGTTACAGTAGGTAGTATGCAA ATCACAGCAACAAATCAGTTTACCCCCTGACAATAAATGAGCATGAAAGCCAGTTTCATC TTTACTATAGATGACAGGACCCTCCCAGCACCTGAAGAGGCCTCCGCTTACTCTCTCCAC ACAAGCCCTAACACACACACACACACACACACACACACACACACACACACTTTTGACTTT TTACTTATTGTATATGTCACACTATAATTATCTTTTTCTTAGGTTCACACACAATTTTCC CATCTTATAAAATCCTTACCCCATTCATCGTCCAAATATATTAAGTTATGTGCTATATGT TTGCTTTCTGTAAATTCTTTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAATGAAGAATAAAATGCCGGGAGTATGTTGATATTAAATTATGAAACATAAATTAACA TGACGTAGTGTCAGTATGAAATACTTCAATTAGTCAAATTAAGACTTACATATTTATTAT GTAATTCAAGGAAAAACACTTATTCGTCTTTAAAAATACCTATATATATATATATATCAA GGAGGGGAGTAGGGGGGGAAATGGAGCTCCATATTTTTGTGATGACCTAAAATAGAGAAG AAAGATTCTTTCCAATATAAGACACTCTCTGTTATTTTAGTTACAGTAGGTAGTATGCAA ATCACAGCAACAAATCAGTTTACCCCCTGACAATAAATGAGCATGAAAGCCAGTTTCATC TTTACTATAGATGACAGGACCCTCCCAGCACCTGAAGAGGCCTCCGCTTACTCTCTCCAC ACAAGCCCTAACACACACACACACACACACACACACACACACACACACACTTTTGACTTT TTACTTATTGTATATGTCACACTATAATTATCTTTTTCTTAGGTTCACACACAATTTTCC CATCTTATAAAATCCTTACCCCATTCATCGTCCAAATATATTAAGTTATGTGCTATATGT TTGCTTTCTGTAAATTCTTTTAAA |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 13-423, gnl|bosTau2|chr24 (7975185-7975572) | |
| 13-423, gnl|canFam2|chr1 (11450147-11449848) | |
| 13-423, gnl|dasNov1|scaffold_41540 (33436-33231) | |
| 13-423, gnl|echTel1|scaffold_298511 (538-240) | |
| 13-423, gnl|hg17|chr18 (65665838-65666142) | |
| 13-423, gnl|Hg17|chr18 (65665842-65666273) | |
| 13-423, gnl|loxAfr1|scaffold_840 (32101-31787) | |
| 13-423, gnl|mm7|chr18 (89618160-89617793) | |
| 13-423, gnl|Mm7|chr18 (89618143-89617695) | |
| 13-423, gnl|monDom2|scaffold_21 (5966352-5966034) | |
| 13-423, gnl|oryCun1|scaffold_76556 (4191-4491) | |
| 13-423, gnl|panTro1|chr17 (62643107-62643409) | |
| 13-423, gnl|rheMac2|chr18 (63431843-63432145) | |
| 13-423, gnl|rn3|chr18 (86255675-86255290) | |
| 458-624, gnl|bosTau2|chr24 (7975567-7975735) | |
| 458-624, gnl|canFam2|chr1 (11449847-11449593) | |
| 458-624, gnl|echTel1|scaffold_298511 (239-11) | |
| 458-624, gnl|hg17|chr18 (65666143-65666401) | |
| 458-624, gnl|Hg17|chr18 (65666268-65666439) | |
| 458-624, gnl|loxAfr1|scaffold_840 (31786-31527) | |
| 458-624, gnl|mm7|chr18 (89617792-89617569) | |
| 458-624, gnl|Mm7|chr18 (89617700-89617529) | |
| 458-624, gnl|monDom2|scaffold_21 (5966033-5965826) | |
| 458-624, gnl|oryCun1|scaffold_76556 (4492-4724) | |
| 458-624, gnl|panTro1|chr17 (62643410-62643660) | |
| 458-624, gnl|rheMac2|chr18 (63432146-63432404) | |
| 458-624, gnl|rn3|chr18 (86255289-86255069) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-423, gnl|bosTau2|chr24 (7975185-7975572) | |
| 13-423, gnl|canFam2|chr1 (11450147-11449848) | |
| 13-423, gnl|dasNov1|scaffold_41540 (33436-33231) | |
| 13-423, gnl|echTel1|scaffold_298511 (538-240) | |
| 13-423, gnl|hg17|chr18 (65665838-65666142) | |
| 13-423, gnl|Hg17|chr18 (65665842-65666273) | |
| 13-423, gnl|loxAfr1|scaffold_840 (32101-31787) | |
| 13-423, gnl|mm7|chr18 (89618160-89617793) | |
| 13-423, gnl|Mm7|chr18 (89618143-89617695) | |
| 13-423, gnl|monDom2|scaffold_21 (5966352-5966034) | |
| 13-423, gnl|oryCun1|scaffold_76556 (4191-4491) | |
| 13-423, gnl|panTro1|chr17 (62643107-62643409) | |
| 13-423, gnl|rheMac2|chr18 (63431843-63432145) | |
| 13-423, gnl|rn3|chr18 (86255675-86255290) | |
| 458-624, gnl|bosTau2|chr24 (7975567-7975735) | |
| 458-624, gnl|canFam2|chr1 (11449847-11449593) | |
| 458-624, gnl|echTel1|scaffold_298511 (239-11) | |
| 458-624, gnl|hg17|chr18 (65666143-65666401) | |
| 458-624, gnl|Hg17|chr18 (65666268-65666439) | |
| 458-624, gnl|loxAfr1|scaffold_840 (31786-31527) | |
| 458-624, gnl|mm7|chr18 (89617792-89617569) | |
| 458-624, gnl|Mm7|chr18 (89617700-89617529) | |
| 458-624, gnl|monDom2|scaffold_21 (5966033-5965826) | |
| 458-624, gnl|oryCun1|scaffold_76556 (4492-4724) | |
| 458-624, gnl|panTro1|chr17 (62643410-62643660) | |
| 458-624, gnl|rheMac2|chr18 (63432146-63432404) | |
| 458-624, gnl|rn3|chr18 (86255289-86255069) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fco (0.314416) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.314416) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| ldo (0.0970026) |