Ss1.1-recc2835c_n15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACAACAGGCACATATAAGAAAACACCAGTTGGATCATGGAGAGCTGGTTTATCATGCA TGCAACTGTTAGCATACACAGTTCTGGGTGTTTTAATTATGAGACTAAAACTCTTCTTGA CACCACACATGTGTGTTATGGCTTCCTTGATCTGCTCAAGACAGCTGTTTGGATGGCTCT TTTGCAAAGTACATCCTGGTGCTGTTGTTTTTGCTGTGTTAGCCGCAATGTCAATACAGG GTTCAGCAAATCTGCAAACCCAGTGGAATATTGTAGGGGAGTTCAGCAATTTGCCACAAG AAGAACTTATAGAATGGATCAAATATAGTACTAAACCAGATGCAGTGTTTGCAGGTGCCA TGCCCACAATGGCAAGTGTGAAACTCTCTGCACTTCGGCCCATTGTGAATCATCCACATT ATGAAGATGCAGGGTTGAGAGCCAGAACGAAAATAGTATATTCAATGTATAGTCGAAAAG CAGCTGAAGAAGTGAAGCGAGAATTGATAAAGTTACAAGTGAATTATTACATTCTGGAAG AGTCCTGGTGTATAAGAAGATCCAAGCCTGGTTGCAGTATGCCCGAAATCTGGGATGTGG AAGATCCTGCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACAACAGGCACATATAAGAAAACACCAGTTGGATCATGGAGAGCTGGTTTATCATGCA TGCAACTGTTAGCATACACAGTTCTGGGTGTTTTAATTATGAGACTAAAACTCTTCTTGA CACCACACATGTGTGTTATGGCTTCCTTGATCTGCTCAAGACAGCTGTTTGGATGGCTCT TTTGCAAAGTACATCCTGGTGCTGTTGTTTTTGCTGTGTTAGCCGCAATGTCAATACAGG GTTCAGCAAATCTGCAAACCCAGTGGAATATTGTAGGGGAGTTCAGCAATTTGCCACAAG AAGAACTTATAGAATGGATCAAATATAGTACTAAACCAGATGCAGTGTTTGCAGGTGCCA TGCCCACAATGGCAAGTGTGAAACTCTCTGCACTTCGGCCCATTGTGAATCATCCACATT ATGAAGATGCAGGGTTGAGAGCCAGAACGAAAATAGTATATTCAATGTATAGTCGAAAAG CAGCTGAAGAAGTGAAGCGAGAATTGATAAAGTTACAAGTGAATTATTACATTCTGGAAG AGTCCTGGTGTATAAGAAGATCCAAGCCTGGTTGCAGTATGCCCGAAATCTGGGATGTGG AAGATCCTGCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 162-280, - strand, RNAz p=0.589058 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 162-280, - strand, RNAz p=0.589058 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 162-337, gnl|bosTau2|chr4 (34890219-34890394) | |
| 162-337, gnl|canFam2|chr14 (49628499-49628304) | |
| 162-337, gnl|danRer3|chr16 (33032061-33031870) | |
| 162-337, gnl|dasNov1|scaffold_104868 (2879-3067) | |
| 162-337, gnl|echTel1|scaffold_280064 (29833-30030) | |
| 162-337, gnl|fr1|chrUn (149591146-149590964) | |
| 162-337, gnl|galGal2|chr2 (46416638-46416843) | |
| 162-337, gnl|hg17|chr7 (32635886-32636078) | |
| 162-337, gnl|Hg17|chr7 (34753182-34753007) | |
| 162-337, gnl|loxAfr1|scaffold_10471 (4971-5165) | |
| 162-337, gnl|mm7|chr9 (24306982-24306786) | |
| 162-337, gnl|Mm7|chr9 (24306968-24306793) | |
| 162-337, gnl|monDom2|scaffold_5 (1454062-1453872) | |
| 162-337, gnl|oryCun1|scaffold_181203 (126483-126680) | |
| 162-337, gnl|panTro1|chr6 (33747127-33747320) | |
| 162-337, gnl|rheMac2|chr3 (93353596-93353399) | |
| 162-337, gnl|rn3|chr8 (24082894-24082697) | |
| 162-337, gnl|tetNig1|chrUn_random (40904982-40905165) | |
| 438-566, gnl|bosTau2|chr4 (34892668-34892796) | |
| 438-566, gnl|canFam2|chr14 (49626230-49626070) | |
| 438-566, gnl|danRer3|chr16 (33030184-33030030) | |
| 438-566, gnl|echTel1|scaffold_280064 (34015-34173) | |
| 438-566, gnl|hg17|chr7 (32640222-32640379) | |
| 438-566, gnl|Hg17|chr7 (34750973-34750845) | |
| 438-566, gnl|loxAfr1|scaffold_10471 (11243-11403) | |
| 438-566, gnl|mm7|chr9 (24305014-24304850) | |
| 438-566, gnl|Mm7|chr9 (24304986-24304858) | |
| 438-566, gnl|monDom2|scaffold_5 (1446471-1446311) | |
| 438-566, gnl|oryCun1|scaffold_181203 (128503-128663) | |
| 438-566, gnl|panTro1|chr6_random (27470652-27470495) | |
| 438-566, gnl|rheMac2|chr3 (93350735-93350576) | |
| 438-566, gnl|rn3|chr8 (24080981-24080821) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-337, gnl|bosTau2|chr4 (34890219-34890394) | |
| 162-337, gnl|canFam2|chr14 (49628499-49628304) | |
| 162-337, gnl|danRer3|chr16 (33032061-33031870) | |
| 162-337, gnl|dasNov1|scaffold_104868 (2879-3067) | |
| 162-337, gnl|echTel1|scaffold_280064 (29833-30030) | |
| 162-337, gnl|fr1|chrUn (149591146-149590964) | |
| 162-337, gnl|galGal2|chr2 (46416638-46416843) | |
| 162-337, gnl|hg17|chr7 (32635886-32636078) | |
| 162-337, gnl|Hg17|chr7 (34753182-34753007) | |
| 162-337, gnl|loxAfr1|scaffold_10471 (4971-5165) | |
| 162-337, gnl|mm7|chr9 (24306982-24306786) | |
| 162-337, gnl|Mm7|chr9 (24306968-24306793) | |
| 162-337, gnl|monDom2|scaffold_5 (1454062-1453872) | |
| 162-337, gnl|oryCun1|scaffold_181203 (126483-126680) | |
| 162-337, gnl|panTro1|chr6 (33747127-33747320) | |
| 162-337, gnl|rheMac2|chr3 (93353596-93353399) | |
| 162-337, gnl|rn3|chr8 (24082894-24082697) | |
| 162-337, gnl|tetNig1|chrUn_random (40904982-40905165) | |
| 438-566, gnl|bosTau2|chr4 (34892668-34892796) | |
| 438-566, gnl|canFam2|chr14 (49626230-49626070) | |
| 438-566, gnl|danRer3|chr16 (33030184-33030030) | |
| 438-566, gnl|echTel1|scaffold_280064 (34015-34173) | |
| 438-566, gnl|hg17|chr7 (32640222-32640379) | |
| 438-566, gnl|Hg17|chr7 (34750973-34750845) | |
| 438-566, gnl|loxAfr1|scaffold_10471 (11243-11403) | |
| 438-566, gnl|mm7|chr9 (24305014-24304850) | |
| 438-566, gnl|Mm7|chr9 (24304986-24304858) | |
| 438-566, gnl|monDom2|scaffold_5 (1446471-1446311) | |
| 438-566, gnl|oryCun1|scaffold_181203 (128503-128663) | |
| 438-566, gnl|panTro1|chr6_random (27470652-27470495) | |
| 438-566, gnl|rheMac2|chr3 (93350735-93350576) | |
| 438-566, gnl|rn3|chr8 (24080981-24080821) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) | |
| jca (0.11396) |