Non-Coding RNA Search

Ss1.1-recc2835c_n3.5

Sequence:


               
               GGCGGGAGATGCTGCAACTGACTCGGCTCCGGCTTTGGTGGCGGCTATCTCCAGCGGTGG
GGGTCCCCGCGAAGAATCTCGGCCTCAGGAAGGTGGCCTCCGGCGTGTCTTCCCGGGGCA
GCACCTCGCCCAGAGCCCTAAACATCTTTGATCGAGATTTGAAGAGGAAACAGAAGAACT
GGGCGGCCCGACAGCCCGAGCCGATGAAGTTTGACTATCTGAAGGAGGAGGTTGGAAGCC
GGATTGCAGACCGTGTGTATGATATAACCAGAGATTTCCCCCTTGCTTTGGATGTTGGTT
GTGGAAGAGGTTACATAGCACAACATTTAAATAAGGAAACCGTTGGAAAGTTTTTTCAAA
CAGACATTGCAGAACATGCTTTGAAAAATACCTTAGAAATGGAAATTCCTACTGTCAGTG
TTTTAGCTGATGAAGAGTTTCTTCCCTTCAGAGAAAATACATTTGATCTAGTGGTTAGCA
GTTTAAGTTTGCACTGGGTGAATGACCTTCCTAGAGCACTTGAACAGATTCATTATGTTT
TAAAACCAGATGGAGTATTTATTGGTGCGATGTTTGGAGGGGACACGCTGTATGAGCTCC
GGTGTTCCTTACAATTGGCAGAGACAGAACGGGAAGGAGGATTTTCCCCGCACGTCTCTC
CTTTCACGGCTGTCAGTGACCTAGGACATCTGCTTGGGAGAGCTGGCTTTACTACACTGA
CTGTGGACACTGATGAAATTCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGAGATGCTGCAACTGACTCGGCTCCGGCTTTGGTGGCGGCTATCTCCAGCGGTGG
GGGTCCCCGCGAAGAATCTCGGCCTCAGGAAGGTGGCCTCCGGCGTGTCTTCCCGGGGCA
GCACCTCGCCCAGAGCCCTAAACATCTTTGATCGAGATTTGAAGAGGAAACAGAAGAACT
GGGCGGCCCGACAGCCCGAGCCGATGAAGTTTGACTATCTGAAGGAGGAGGTTGGAAGCC
GGATTGCAGACCGTGTGTATGATATAACCAGAGATTTCCCCCTTGCTTTGGATGTTGGTT
GTGGAAGAGGTTACATAGCACAACATTTAAATAAGGAAACCGTTGGAAAGTTTTTTCAAA
CAGACATTGCAGAACATGCTTTGAAAAATACCTTAGAAATGGAAATTCCTACTGTCAGTG
TTTTAGCTGATGAAGAGTTTCTTCCCTTCAGAGAAAATACATTTGATCTAGTGGTTAGCA
GTTTAAGTTTGCACTGGGTGAATGACCTTCCTAGAGCACTTGAACAGATTCATTATGTTT
TAAAACCAGATGGAGTATTTATTGGTGCGATGTTTGGAGGGGACACGCTGTATGAGCTCC
GGTGTTCCTTACAATTGGCAGAGACAGAACGGGAAGGAGGATTTTCCCCGCACGTCTCTC
CTTTCACGGCTGTCAGTGACCTAGGACATCTGCTTGGGAGAGCTGGCTTTACTACACTGA
CTGTGGACACTGATGAAATTCAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|40018636|ref|NP_951007.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|40018636|ref|NP_951007.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               2-232, gnl|bosTau2|chr13 (2660002-2659772)
               

               
               2-232, gnl|Hg17|chr20 (13713708-13713938)
               

               
               2-232, gnl|Mm7|chr2 (139911558-139911788)
               


               
               380-491, gnl|bosTau2|chr13 (2650091-2649980)
               

               
               380-491, gnl|Hg17|chr20 (13723480-13723591)
               

               
               380-491, gnl|Mm7|chr2 (139924747-139924858)
               


               
               524-731, gnl|bosTau2|chr13 (2646560-2646353)
               

               
               524-731, gnl|Hg17|chr20 (13730128-13730335)
               

               
               524-731, gnl|Mm7|chr2 (139929564-139929771)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-232, gnl|bosTau2|chr13 (2660002-2659772)
               

               
               2-232, gnl|Hg17|chr20 (13713708-13713938)
               

               
               2-232, gnl|Mm7|chr2 (139911558-139911788)
               


               
               380-491, gnl|bosTau2|chr13 (2650091-2649980)
               

               
               380-491, gnl|Hg17|chr20 (13723480-13723591)
               

               
               380-491, gnl|Mm7|chr2 (139924747-139924858)
               


               
               524-731, gnl|bosTau2|chr13 (2646560-2646353)
               

               
               524-731, gnl|Hg17|chr20 (13730128-13730335)
               

               
               524-731, gnl|Mm7|chr2 (139929564-139929771)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               bfe (0.149858)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               ecc (0.115035)

	2-232, gnl\|bosTau2\|chr13 (2660002-2659772)
	2-232, gnl\|Hg17\|chr20 (13713708-13713938)
	2-232, gnl\|Mm7\|chr2 (139911558-139911788)

	380-491, gnl\|bosTau2\|chr13 (2650091-2649980)
	380-491, gnl\|Hg17\|chr20 (13723480-13723591)
	380-491, gnl\|Mm7\|chr2 (139924747-139924858)

	524-731, gnl\|bosTau2\|chr13 (2646560-2646353)
	524-731, gnl\|Hg17\|chr20 (13730128-13730335)
	524-731, gnl\|Mm7\|chr2 (139929564-139929771)