Non-Coding RNA Search

Ss1.1-rece02_k15.5

Sequence:


               
               CGCCAGCTCTGCTGGGCTTGGCGAGTTCCAGGTGGTGGGGAGGGTCACCTGGCCCGGGGC
GGGGAGCTTCCCCGGGTGGTAGCCGGAGACCCCCATTGGCTGCGCAGCCTGATGTGTGCC
TGCCCCCCATCACTGGAAGGGGCGAGGGCGCCCCTTCCAGGGGCGGCTGACACCCGGATG
TGCACGTCTCCCTGGCTGCAGCCACACCCAAGAGGCCCGTTGGCGCACGCAAGCGTTCGC
AGACCCTCTCCCGCGTGGGCCGTGATGAGCAGGCCCCACCCTCGGGGCCTGTAGTGCCCA
GAACCCAGGCCACGCCCGCCTCCCTAGGGTGGGTGCCGGGGGCCCGCCCTGGACCGCAGC
CTGGGTCCCCGTCTCAGCCCCGCCCCTGGGCGGCTGGGGGAGAGGCCTCTCGGAAGTGCC
CCTGCGCGGTGGCCGTGGCCCCCCCTAGTCCGCCCCCTTCCTCGAGCTGTGAGCCTCCGC
TGAAGTGCCCTTGCCGCCCCTACGCTTTCGATGTGTGACGAGGCCCCGTGTTCCCGACTT
TCCCAGAGAAGCGAATAAACAGTGTGAACAGCCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCAGCTCTGCTGGGCTTGGCGAGTTCCAGGTGGTGGGGAGGGTCACCTGGCCCGGGGC
GGGGAGCTTCCCCGGGTGGTAGCCGGAGACCCCCATTGGCTGCGCAGCCTGATGTGTGCC
TGCCCCCCATCACTGGAAGGGGCGAGGGCGCCCCTTCCAGGGGCGGCTGACACCCGGATG
TGCACGTCTCCCTGGCTGCAGCCACACCCAAGAGGCCCGTTGGCGCACGCAAGCGTTCGC
AGACCCTCTCCCGCGTGGGCCGTGATGAGCAGGCCCCACCCTCGGGGCCTGTAGTGCCCA
GAACCCAGGCCACGCCCGCCTCCCTAGGGTGGGTGCCGGGGGCCCGCCCTGGACCGCAGC
CTGGGTCCCCGTCTCAGCCCCGCCCCTGGGCGGCTGGGGGAGAGGCCTCTCGGAAGTGCC
CCTGCGCGGTGGCCGTGGCCCCCCCTAGTCCGCCCCCTTCCTCGAGCTGTGAGCCTCCGC
TGAAGTGCCCTTGCCGCCCCTACGCTTTCGATGTGTGACGAGGCCCCGTGTTCCCGACTT
TCCCAGAGAAGCGAATAAACAGTGTGAACAGCCAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-573, gnl|bosTau2|chr7 (10660717-10660094)
               

               
               1-573, gnl|Hg17|chr19 (698722-699326)
               

               
               1-573, gnl|Mm7|chr10 (79600350-79600933)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-573, gnl|bosTau2|chr7 (10660717-10660094)
               

               
               1-573, gnl|Hg17|chr19 (698722-699326)
               

               
               1-573, gnl|Mm7|chr10 (79600350-79600933)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fcc (0.593354)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	1-573, gnl\|bosTau2\|chr7 (10660717-10660094)
	1-573, gnl\|Hg17\|chr19 (698722-699326)
	1-573, gnl\|Mm7\|chr10 (79600350-79600933)

	fcc (0.593354)
	ece (0.229305)
	eye (0.170503)
	csp (0.161186)
	eep (0.122564)
	ecc (0.115035)