Non-Coding RNA Search

Ss1.1-rece02c_p21.5

Sequence:


               
               CCCCTCCGCCCTCGGCCTTCTCGCATTACTCCAAACCCAGATGGAGCCACCTTCGGGGTT
TCTTTCTGGCACGGCCACTGTCTTGGGGAGTGGAGAAGGTATTCGTAGAACTGTTAAATC
AGCCACCCCACTGGGAAGATTCCTTCTCTGAGTTTTCTAAAGCTGGCGGGTTGTAGTTAG
GCAGAAAATCGGTTCATGCAAGTCTAGTCACCCTGTGGCCCTTTTCTGCATGACTACACA
CAGAAAGTCATGCTCTGCTCCCAAGGCCTGCCTCCCAAGCCTGGACGTGCACCCCCTCTC
CCCTCGCAGAAGCCGTCCCCAGCAGCTTCATGTCACAAGCTTCCCAGGCTGTGCCCCCTG
GAAAACTCCAGCTCAAGTCCCTGCGTCCCCGTGGGCGGTGCTGGGCAGCCAGCATTCCTG
GAAGTTCCCCCTTTGGCAACGGTGTGTGGGTGTTCGGTTCTGTGTCTGGTGACTATGGAC
AGACAGTAAATCTCCCTGTGACCCGTGGTAGCTGTGAGGCGGCTCTGGAACGCCAAGAGC
TGTTTGCTTTGAACCGTGAAGAAAACTGTGTTTTGAGTTTAGCTGAGATTAAGAAAAAAG
TTCCTCCAGTGACTGTTAATGTAAACCTGGTTATTAAAATAACTGTAAAACCAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTCCGCCCTCGGCCTTCTCGCATTACTCCAAACCCAGATGGAGCCACCTTCGGGGTT
TCTTTCTGGCACGGCCACTGTCTTGGGGAGTGGAGAAGGTATTCGTAGAACTGTTAAATC
AGCCACCCCACTGGGAAGATTCCTTCTCTGAGTTTTCTAAAGCTGGCGGGTTGTAGTTAG
GCAGAAAATCGGTTCATGCAAGTCTAGTCACCCTGTGGCCCTTTTCTGCATGACTACACA
CAGAAAGTCATGCTCTGCTCCCAAGGCCTGCCTCCCAAGCCTGGACGTGCACCCCCTCTC
CCCTCGCAGAAGCCGTCCCCAGCAGCTTCATGTCACAAGCTTCCCAGGCTGTGCCCCCTG
GAAAACTCCAGCTCAAGTCCCTGCGTCCCCGTGGGCGGTGCTGGGCAGCCAGCATTCCTG
GAAGTTCCCCCTTTGGCAACGGTGTGTGGGTGTTCGGTTCTGTGTCTGGTGACTATGGAC
AGACAGTAAATCTCCCTGTGACCCGTGGTAGCTGTGAGGCGGCTCTGGAACGCCAAGAGC
TGTTTGCTTTGAACCGTGAAGAAAACTGTGTTTTGAGTTTAGCTGAGATTAAGAAAAAAG
TTCCTCCAGTGACTGTTAATGTAAACCTGGTTATTAAAATAACTGTAAAACCAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-653, gnl|bosTau2|chr7 (40018918-40018325)
               

               
               53-653, gnl|Hg17|chr5 (146751180-146750568)
               

               
               53-653, gnl|Mm7|chr18 (43698901-43698261)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-653, gnl|bosTau2|chr7 (40018918-40018325)
               

               
               53-653, gnl|Hg17|chr5 (146751180-146750568)
               

               
               53-653, gnl|Mm7|chr18 (43698901-43698261)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               fbs (0.350693)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               fbs (0.350693)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	53-653, gnl\|bosTau2\|chr7 (40018918-40018325)
	53-653, gnl\|Hg17\|chr5 (146751180-146750568)
	53-653, gnl\|Mm7\|chr18 (43698901-43698261)

	ecc (0.46014)
	ece (0.45861)
	fbs (0.350693)
	gul (0.177588)
	ton (0.1755)
	cut (0.169924)
	fhi (0.169578)
	cag (0.151194)
	nca (0.136874)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)