Non-Coding RNA Search

Ss1.1-rece03_c11.5

Sequence:


               
               GACCCTTTTACGCTGTCAAGTGCAACAGCAGCCCAGGCGTGCTGAAGGTCCTGGCTGAGC
TGGGGCTGGGCTTCAGCTGTGCCAATAAGGCAGAGATGGAGTTGGTCCAGCATATCGGTG
TCCCCACCAGTAAGATCATCTACGCCAACCCCTGTAAGCAAATTGCACAGATCAAGTATG
CTGCCAAGCATGGGGTCCAGCTGCTGAGCTTTGACAACGAGATGGAGCTGGCAAAGGTGG
TAAAAAGCCACCCCAGTGCCAAGATGGTTCTTTGCATTGCCACCGATGACTCCCACTCCC
TGAGCCACCTGAGCTTCAAGTTTGGGGCGTCGCTGAAATCCTGCAGACACCTGCTTGAAA
ATGCCAAGAGGAAACCACATGGAGGTGGTGGGTGTGAGTTTTCACATTGGCAGTGGCTGT
CCTGACCCTCAGGCCTACGCTCAGTCCATTGCAGATGCCCGGCTTGTGTTTGAAATGGGT
GCTGAGCTGGGCCACAGGATGCACATCCTGGACCTCGGCGGCGGCTTCCCTGGAGTGGAG
GGGGCCAAAGTGAGATTCGAAGAGATTGCTTCTGTGATCAACTCAGCCTTGGACCTGTAC
TTCCCAGAGGGCTGTGGTATAGACATCCTTGCCAAGCTGGGGCGCTACTACGTGACCTCG
GCTTTCACCTTGGCAGTCAGCATCATCGCCAAGAAGGAGGTTCTTCTGGACCAGCCTGGC
AGGGAGGAGGAAACCGGTTCCGCCCCCAAGACCATCGTGTACCACCTCGGTGAGGGCGTG
TACGGAATCTTCAACTCAGTCCTGTTTGACAACACCTGCCCTACCCCTGTCCTGCCGAAG
AAACCATCCCCGGAGCAGCCTCTGTACAGCAGCAGCCTCTGGGGCCCGGTGGTCGATGGC
TGTGACTGCGTAACTGAGGGGCTGTGGCTGCCATCACTACATGTAGGGGACTGGCTGGTC
TTTGAGAACATGGGCGCCTACACCGTGGGCATGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCTTTTACGCTGTCAAGTGCAACAGCAGCCCAGGCGTGCTGAAGGTCCTGGCTGAGC
TGGGGCTGGGCTTCAGCTGTGCCAATAAGGCAGAGATGGAGTTGGTCCAGCATATCGGTG
TCCCCACCAGTAAGATCATCTACGCCAACCCCTGTAAGCAAATTGCACAGATCAAGTATG
CTGCCAAGCATGGGGTCCAGCTGCTGAGCTTTGACAACGAGATGGAGCTGGCAAAGGTGG
TAAAAAGCCACCCCAGTGCCAAGATGGTTCTTTGCATTGCCACCGATGACTCCCACTCCC
TGAGCCACCTGAGCTTCAAGTTTGGGGCGTCGCTGAAATCCTGCAGACACCTGCTTGAAA
ATGCCAAGAGGAAACCACATGGAGGTGGTGGGTGTGAGTTTTCACATTGGCAGTGGCTGT
CCTGACCCTCAGGCCTACGCTCAGTCCATTGCAGATGCCCGGCTTGTGTTTGAAATGGGT
GCTGAGCTGGGCCACAGGATGCACATCCTGGACCTCGGCGGCGGCTTCCCTGGAGTGGAG
GGGGCCAAAGTGAGATTCGAAGAGATTGCTTCTGTGATCAACTCAGCCTTGGACCTGTAC
TTCCCAGAGGGCTGTGGTATAGACATCCTTGCCAAGCTGGGGCGCTACTACGTGACCTCG
GCTTTCACCTTGGCAGTCAGCATCATCGCCAAGAAGGAGGTTCTTCTGGACCAGCCTGGC
AGGGAGGAGGAAACCGGTTCCGCCCCCAAGACCATCGTGTACCACCTCGGTGAGGGCGTG
TACGGAATCTTCAACTCAGTCCTGTTTGACAACACCTGCCCTACCCCTGTCCTGCCGAAG
AAACCATCCCCGGAGCAGCCTCTGTACAGCAGCAGCCTCTGGGGCCCGGTGGTCGATGGC
TGTGACTGCGTAACTGAGGGGCTGTGGCTGCCATCACTACATGTAGGGGACTGGCTGGTC
TTTGAGAACATGGGCGCCTACACCGTGGGCATGGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21754323|dbj|BAC04489.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21754323|dbj|BAC04489.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-338, gnl|bosTau2|chr11 (66707760-66707425)
               

               
               3-338, gnl|Hg17|chr7 (128263089-128263381)
               

               
               3-338, gnl|Mm7|chr5 (95187780-95188112)
               


               
               379-986, gnl|bosTau2|chr11 (66707370-66706763)
               

               
               379-986, gnl|Hg17|chr7 (128263424-128264328)
               

               
               379-986, gnl|Mm7|chr5 (95188155-95188762)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-338, gnl|bosTau2|chr11 (66707760-66707425)
               

               
               3-338, gnl|Hg17|chr7 (128263089-128263381)
               

               
               3-338, gnl|Mm7|chr5 (95187780-95188112)
               


               
               379-986, gnl|bosTau2|chr11 (66707370-66706763)
               

               
               379-986, gnl|Hg17|chr7 (128263424-128264328)
               

               
               379-986, gnl|Mm7|chr5 (95188155-95188762)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	3-338, gnl\|bosTau2\|chr11 (66707760-66707425)
	3-338, gnl\|Hg17\|chr7 (128263089-128263381)
	3-338, gnl\|Mm7\|chr5 (95187780-95188112)

	379-986, gnl\|bosTau2\|chr11 (66707370-66706763)
	379-986, gnl\|Hg17\|chr7 (128263424-128264328)
	379-986, gnl\|Mm7\|chr5 (95188155-95188762)