Non-Coding RNA Search

Ss1.1-rece03_e13.5

Sequence:


               
               TGAGGCCTGTGGCCCAGAGCGTGGGCCGCGCCTTCCTGGAGTACTACCAGGAGCACCTGG
AGTACGCCTGCCCCACAGAGGACATCTACCTGGAGTAGCTGCCCGCCACTCCCCTGCTCC
AGGAGCAGCTGGGCTGGGAGTGTCTCAGGAGGCCCCCTCAGCTTTGGCAAGGACTGGACC
GGGGGCACATGGGACCTGACATCCAGGGGGTCTCCGGGCTGTGCTGGGAAGCCTCCTCCT
TGCTCCCCAGAGGCTGCTGAAGAGTGGAGCCTGCACCTCCGCTTCCCCCGATCCATTCTC
TCTCTGTGTCACCCCGGCCGCCCTCCTCTCTCCTCCTGTCTGTCTCTGCTCCTCTGTGCC
TGCAAACTCTCGTCCTCTGCTCTTTACTTTGGGGTCAGAATTGGGAAGCTCCCACGTGAC
CCCCACTTGCTCTTCCCCCTGGGATTTATAAAGGAATTTTAATTTTTATAGTGACTATCA
AGGGATCATCCCATCTTCGAGCTTAGGGACAAAGAGAGCCCCCCATACTGCCTCACTTGG
AGCTCGGGATGCAGGGAGGGGCTCCCCAGAAGGGCCTGGGGGAGACGAGGAGTAGTTGAT
GCTCACCCTAAGCCCCCAGACTGCTAGGAGGAGGGTGCCCTGCCGGGGCCCCAGCCACAC
CAGCATCTGCTTTGCCGCTGCAAACACTTCCCACAGTCCAGCACCTCAATAAACTCTCTG
CTTGGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGCCTGTGGCCCAGAGCGTGGGCCGCGCCTTCCTGGAGTACTACCAGGAGCACCTGG
AGTACGCCTGCCCCACAGAGGACATCTACCTGGAGTAGCTGCCCGCCACTCCCCTGCTCC
AGGAGCAGCTGGGCTGGGAGTGTCTCAGGAGGCCCCCTCAGCTTTGGCAAGGACTGGACC
GGGGGCACATGGGACCTGACATCCAGGGGGTCTCCGGGCTGTGCTGGGAAGCCTCCTCCT
TGCTCCCCAGAGGCTGCTGAAGAGTGGAGCCTGCACCTCCGCTTCCCCCGATCCATTCTC
TCTCTGTGTCACCCCGGCCGCCCTCCTCTCTCCTCCTGTCTGTCTCTGCTCCTCTGTGCC
TGCAAACTCTCGTCCTCTGCTCTTTACTTTGGGGTCAGAATTGGGAAGCTCCCACGTGAC
CCCCACTTGCTCTTCCCCCTGGGATTTATAAAGGAATTTTAATTTTTATAGTGACTATCA
AGGGATCATCCCATCTTCGAGCTTAGGGACAAAGAGAGCCCCCCATACTGCCTCACTTGG
AGCTCGGGATGCAGGGAGGGGCTCCCCAGAAGGGCCTGGGGGAGACGAGGAGTAGTTGAT
GCTCACCCTAAGCCCCCAGACTGCTAGGAGGAGGGTGCCCTGCCGGGGCCCCAGCCACAC
CAGCATCTGCTTTGCCGCTGCAAACACTTCCCACAGTCCAGCACCTCAATAAACTCTCTG
CTTGGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12850988|dbj|BAB28912.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12850988|dbj|BAB28912.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               25-169, - strand, RNAz p=0.788148
               

               
               640-730, - strand, RNAz p=0.643779

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-169, - strand, RNAz p=0.788148
               

               
               640-730, - strand, RNAz p=0.643779

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-730, gnl|bosTau2|chr5 (75664836-75664137)
               

               
               25-730, gnl|Hg17|chr22 (49339278-49340121)
               

               
               25-730, gnl|Mm7|chr15 (89544516-89545325)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-730, gnl|bosTau2|chr5 (75664836-75664137)
               

               
               25-730, gnl|Hg17|chr22 (49339278-49340121)
               

               
               25-730, gnl|Mm7|chr15 (89544516-89545325)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.687916)
               

               
               ebs (0.354904)
               

               
               hyp (0.285673)
               

               
               eje (0.197668)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               ebs (0.354904)
               

               
               hyp (0.285673)
               

               
               eje (0.197668)
               

               
               ecc (0.115035)

	25-169, - strand, RNAz p=0.788148
	640-730, - strand, RNAz p=0.643779

	25-730, gnl\|bosTau2\|chr5 (75664836-75664137)
	25-730, gnl\|Hg17\|chr22 (49339278-49340121)
	25-730, gnl\|Mm7\|chr15 (89544516-89545325)

	ece (0.687916)
	ebs (0.354904)
	hyp (0.285673)
	eje (0.197668)
	ecc (0.115035)