Ss1.1-rece05c_f6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGAGCCCGTGTTCTGGCGCTGGGGTACAAGGAACTGGGGCACCTCACCCACCAGCAGG CGCGGGAAGTCAAGCGAGAAGCCCTAGAGTGCAACCTCAAGTTCGTTGGCTTCATCGTGG TCTCCTGCCCACTCAAGGCTGACTCCAAGGCCGTGATCCGTGAGATCCAGAATGCCTCCC ATCGGGTGGTCATGATCACAGGTGACAACCCGCTCACTGCCTGCCACGTGGCTCAGGAGC TACACTTCATTGAAAAGGCTCACACACTGATCCTGCAGCCTCCCACAGAGAAAGGTCAAC CATGTGAGTGGCGCTCCATCGATGGCAGTATCATACTACCCCTGGCCCCAGGCTCCCCGA AGGCACTGGCCCTGGAGCATGCGCTGTGCCTCACGGGTGACGGCCTGGCCCACCTGCAGG CCGAGGACCCACAGCTGCTGCTTCGCCTCATCCCCTATGTGCAAGTATTCGCCCGAGTGG CCCCCAAACAGAAGGAGTTTGTGATCACCAGCCTGAAGGAGCTGGGCTACGTGACCCTCA TGTGTGGGGATGGCACCAATGATGTGGGTGCCCTGAAGCACGCAGACGTGGGTGTGGCAC TCCTGGCCAATGCCCCCGAGAGGGTCATCGAACGGCGGCGACGGCCCAGGGACAGCCCCA TCTTGAGCAACAGTGGAGTCAGGACCACCTCCAGGGCAGCCAAGCAGAGGTCGGGGCTCC CACCCCCAGAGGAGCAGCTGGCCTCCCAGCGGGACCGCCTGAGCCAGGTGCTGCGGGACC TTGAGGATGAGAGCACACCCATCGTGAAGCTGGGAGATGCCAGCATCGCTGCGCCCTTCA CCTCCAAGCTCTCTTCCATCCAGTGCATTTGCCACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGAGCCCGTGTTCTGGCGCTGGGGTACAAGGAACTGGGGCACCTCACCCACCAGCAGG CGCGGGAAGTCAAGCGAGAAGCCCTAGAGTGCAACCTCAAGTTCGTTGGCTTCATCGTGG TCTCCTGCCCACTCAAGGCTGACTCCAAGGCCGTGATCCGTGAGATCCAGAATGCCTCCC ATCGGGTGGTCATGATCACAGGTGACAACCCGCTCACTGCCTGCCACGTGGCTCAGGAGC TACACTTCATTGAAAAGGCTCACACACTGATCCTGCAGCCTCCCACAGAGAAAGGTCAAC CATGTGAGTGGCGCTCCATCGATGGCAGTATCATACTACCCCTGGCCCCAGGCTCCCCGA AGGCACTGGCCCTGGAGCATGCGCTGTGCCTCACGGGTGACGGCCTGGCCCACCTGCAGG CCGAGGACCCACAGCTGCTGCTTCGCCTCATCCCCTATGTGCAAGTATTCGCCCGAGTGG CCCCCAAACAGAAGGAGTTTGTGATCACCAGCCTGAAGGAGCTGGGCTACGTGACCCTCA TGTGTGGGGATGGCACCAATGATGTGGGTGCCCTGAAGCACGCAGACGTGGGTGTGGCAC TCCTGGCCAATGCCCCCGAGAGGGTCATCGAACGGCGGCGACGGCCCAGGGACAGCCCCA TCTTGAGCAACAGTGGAGTCAGGACCACCTCCAGGGCAGCCAAGCAGAGGTCGGGGCTCC CACCCCCAGAGGAGCAGCTGGCCTCCCAGCGGGACCGCCTGAGCCAGGTGCTGCGGGACC TTGAGGATGAGAGCACACCCATCGTGAAGCTGGGAGATGCCAGCATCGCTGCGCCCTTCA CCTCCAAGCTCTCTTCCATCCAGTGCATTTGCCACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 70-187, - strand, RNAz p=0.992418 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 70-187, - strand, RNAz p=0.992418 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 50-187, gnl|bosTau2|chr7 (3826597-3826734) | |
| 50-187, gnl|canFam2|chr20 (46629033-46628856) | |
| 50-187, gnl|danRer3|chrUn (12275991-12275842) | |
| 50-187, gnl|fr1|chrUn (38796246-38796116) | |
| 50-187, gnl|galGal2|chrUn (129197720-129197914) | |
| 50-187, gnl|hg17|chr19 (19624402-19624579) | |
| 50-187, gnl|Hg17|chr19 (19624539-19624402) | |
| 50-187, gnl|loxAfr1|scaffold_18113 (25630-25485) | |
| 50-187, gnl|mm7|chr8 (68255640-68255462) | |
| 50-187, gnl|Mm7|chr8 (68255501-68255638) | |
| 50-187, gnl|monDom2|scaffold_106 (1398529-1398664) | |
| 50-187, gnl|oryCun1|scaffold_158516 (235-403) | |
| 50-187, gnl|panTro1|chr20 (20702222-20702399) | |
| 50-187, gnl|rheMac2|chr19 (19349492-19349668) | |
| 50-187, gnl|rn3|chr16 (20106928-20107106) | |
| 50-187, gnl|tetNig1|chr3 (11206028-11205898) | |
| 50-187, gnl|xenTro1|scaffold_40 (2883363-2883510) | |
| 303-495, gnl|bosTau2|chr7 (3829093-3829285) | |
| 303-495, gnl|Hg17|chr19 (19621741-19621549) | |
| 303-495, gnl|Mm7|chr8 (68258077-68258269) | |
| 591-753, gnl|bosTau2|chr7 (3830608-3830770) | |
| 591-753, gnl|Hg17|chr19 (19619569-19619407) | |
| 591-753, gnl|Mm7|chr8 (68259894-68260053) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 50-187, gnl|bosTau2|chr7 (3826597-3826734) | |
| 50-187, gnl|canFam2|chr20 (46629033-46628856) | |
| 50-187, gnl|danRer3|chrUn (12275991-12275842) | |
| 50-187, gnl|fr1|chrUn (38796246-38796116) | |
| 50-187, gnl|galGal2|chrUn (129197720-129197914) | |
| 50-187, gnl|hg17|chr19 (19624402-19624579) | |
| 50-187, gnl|Hg17|chr19 (19624539-19624402) | |
| 50-187, gnl|loxAfr1|scaffold_18113 (25630-25485) | |
| 50-187, gnl|mm7|chr8 (68255640-68255462) | |
| 50-187, gnl|Mm7|chr8 (68255501-68255638) | |
| 50-187, gnl|monDom2|scaffold_106 (1398529-1398664) | |
| 50-187, gnl|oryCun1|scaffold_158516 (235-403) | |
| 50-187, gnl|panTro1|chr20 (20702222-20702399) | |
| 50-187, gnl|rheMac2|chr19 (19349492-19349668) | |
| 50-187, gnl|rn3|chr16 (20106928-20107106) | |
| 50-187, gnl|tetNig1|chr3 (11206028-11205898) | |
| 50-187, gnl|xenTro1|scaffold_40 (2883363-2883510) | |
| 303-495, gnl|bosTau2|chr7 (3829093-3829285) | |
| 303-495, gnl|Hg17|chr19 (19621741-19621549) | |
| 303-495, gnl|Mm7|chr8 (68258077-68258269) | |
| 591-753, gnl|bosTau2|chr7 (3830608-3830770) | |
| 591-753, gnl|Hg17|chr19 (19619569-19619407) | |
| 591-753, gnl|Mm7|chr8 (68259894-68260053) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| med (0.116252) |