Non-Coding RNA Search

Ss1.1-rece05c_p21.5

Sequence:


               
               TCAAGCTGGCCACCAATGAGGTGGGCAGGATCCAGTCCTCCCTGAGGGCTTTCAACTCCA
AGCTGCCAAACCCCGTGGAGTATGAGACAGGAAAACTCTGTAGCTAATGGGGGACCCACT
CCAGCACTGGGCAGGGAGGGGATCCATGAATCCGGGGCGCAAAGATCACCTAAGCCCTCA
CCTTAGTGCCAACAGGGTGCTCCCTTAAGACTGTCAGCACCCAGCGTGATGGGACCTCGG
GGCTTGGACTGATGCAGGCAGGAGAGGAAGAAACAGCCACGGCACACACGCGCACACTCA
CCACGCACGTGCACACAGCCGCACGCACTTGCACGGGGAAGCTACAGTTCAGCAGCCTGG
AATCTGTAAAGTCGGTGCTTTCTCAAATGGATGCGGTTGAAGGAGAGGAGCCTAGGGAGA
GATTCAGGAAAAGAACCAGCCAAACCCTGCAACACACAACTTCTTAAAAGTGATTCTTAT
CATTCAAGAAAGCCAGAGGGAACAGCAGTGGGAGGGTGAGCGCTGCCTCTCCCTCGGTGG
TGGAGTCACTTTTCTATTCTTTTTAACCAGATTTCTTAAAATGGTGTTGTTTCGTGATTG
GTTCTTACTTTTTGTACGATGCCTCCTATAAGCCCTCCAGACATGGAATGCTCATGGAGC
CGGCTCCCATGGGAAACAAAAAGTGACACCCTCAGAGGACGGCTAAGGGCAGGCAGGCAG
CCCTGCTCCCCCTCCCTTGGGCCCCTAGCTTCCTTGGCCTCCCCCCGTTTCAGGGCCGGG
CGTGCTCCACGTTCCCCTCGGGATCCATCTGGTGCTCCTCTCCCAACAGCATCCCATTTT
GTCCAAGAAAGCAGCTCTGTCAAGTTAGAGACCATGTATAGGGACATTTTCTTTAAGAAA
AAAACAAAAAAACAGAAAAATAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAGCTGGCCACCAATGAGGTGGGCAGGATCCAGTCCTCCCTGAGGGCTTTCAACTCCA
AGCTGCCAAACCCCGTGGAGTATGAGACAGGAAAACTCTGTAGCTAATGGGGGACCCACT
CCAGCACTGGGCAGGGAGGGGATCCATGAATCCGGGGCGCAAAGATCACCTAAGCCCTCA
CCTTAGTGCCAACAGGGTGCTCCCTTAAGACTGTCAGCACCCAGCGTGATGGGACCTCGG
GGCTTGGACTGATGCAGGCAGGAGAGGAAGAAACAGCCACGGCACACACGCGCACACTCA
CCACGCACGTGCACACAGCCGCACGCACTTGCACGGGGAAGCTACAGTTCAGCAGCCTGG
AATCTGTAAAGTCGGTGCTTTCTCAAATGGATGCGGTTGAAGGAGAGGAGCCTAGGGAGA
GATTCAGGAAAAGAACCAGCCAAACCCTGCAACACACAACTTCTTAAAAGTGATTCTTAT
CATTCAAGAAAGCCAGAGGGAACAGCAGTGGGAGGGTGAGCGCTGCCTCTCCCTCGGTGG
TGGAGTCACTTTTCTATTCTTTTTAACCAGATTTCTTAAAATGGTGTTGTTTCGTGATTG
GTTCTTACTTTTTGTACGATGCCTCCTATAAGCCCTCCAGACATGGAATGCTCATGGAGC
CGGCTCCCATGGGAAACAAAAAGTGACACCCTCAGAGGACGGCTAAGGGCAGGCAGGCAG
CCCTGCTCCCCCTCCCTTGGGCCCCTAGCTTCCTTGGCCTCCCCCCGTTTCAGGGCCGGG
CGTGCTCCACGTTCCCCTCGGGATCCATCTGGTGCTCCTCTCCCAACAGCATCCCATTTT
GTCCAAGAAAGCAGCTCTGTCAAGTTAGAGACCATGTATAGGGACATTTTCTTTAAGAAA
AAAACAAAAAAACAGAAAAATAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               432-586, + strand, RNAz p=0.944241

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               432-586, + strand, RNAz p=0.944241

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               496-574, + strand, RNAmicro p=0.999717

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               496-574, + strand, RNAmicro p=0.999717

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_021165, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_021165, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-679, gnl|bosTau2|chr2 (50117537-50118218)
               

               
               1-679, gnl|Hg17|chr1 (173982215-173982876)
               

               
               1-679, gnl|Mm7|chr1 (158208795-158208135)
               


               
               689-922, gnl|bosTau2|chr2 (50118247-50118491)
               

               
               689-922, gnl|Hg17|chr1 (173982891-173983136)
               

               
               689-922, gnl|Mm7|chr1 (158208091-158207835)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-679, gnl|bosTau2|chr2 (50117537-50118218)
               

               
               1-679, gnl|Hg17|chr1 (173982215-173982876)
               

               
               1-679, gnl|Mm7|chr1 (158208795-158208135)
               


               
               689-922, gnl|bosTau2|chr2 (50118247-50118491)
               

               
               689-922, gnl|Hg17|chr1 (173982891-173983136)
               

               
               689-922, gnl|Mm7|chr1 (158208091-158207835)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.45861)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               fhi (0.169578)

	1-679, gnl\|bosTau2\|chr2 (50117537-50118218)
	1-679, gnl\|Hg17\|chr1 (173982215-173982876)
	1-679, gnl\|Mm7\|chr1 (158208795-158208135)

	689-922, gnl\|bosTau2\|chr2 (50118247-50118491)
	689-922, gnl\|Hg17\|chr1 (173982891-173983136)
	689-922, gnl\|Mm7\|chr1 (158208091-158207835)