Non-Coding RNA Search

Ss1.1-rece06c_b3.5

Sequence:


               
               TTTTTTCCTGTTGGGAGCTGCCTTGGGCCCATCCTCCCCTTTGGGGGGGAGCCCAATCCA
TGGCCCAGGCCCGCACCCATAGGGACCAATGGAGCCTGAGCAGCCTTGTTTACAGCTTCT
TTCCTGCTCCTGCATCCTGCCAGGCTCCTCTGCCAACCGTAGGCCTCCCTGTTCCCTGCT
CTGTGTCCAACCTCCCTGCACTTTTGCCTGCCTCCCCTTCATCCTCTTGGCTTCCCTACC
CCTGCACTTCTGGAAACCTCCCTGCACTTCTGGAAACCTCCCTGACCATCTCCCATACTC
TCTTTGCTCTCAACCTTCCTGCATCTCTTGCGGCCTTCCTGCAGCTACACCCTCCCGAGT
CCCCTGCACCTCATCCCGGATCTCCATTTCCCAACTTTTTATTGTCTAAGCACCCCCCCC
TCCACCCCCTCCTCTCTTCCTTCCCTTCCTCATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCCTGTTGGGAGCTGCCTTGGGCCCATCCTCCCCTTTGGGGGGGAGCCCAATCCA
TGGCCCAGGCCCGCACCCATAGGGACCAATGGAGCCTGAGCAGCCTTGTTTACAGCTTCT
TTCCTGCTCCTGCATCCTGCCAGGCTCCTCTGCCAACCGTAGGCCTCCCTGTTCCCTGCT
CTGTGTCCAACCTCCCTGCACTTTTGCCTGCCTCCCCTTCATCCTCTTGGCTTCCCTACC
CCTGCACTTCTGGAAACCTCCCTGCACTTCTGGAAACCTCCCTGACCATCTCCCATACTC
TCTTTGCTCTCAACCTTCCTGCATCTCTTGCGGCCTTCCTGCAGCTACACCCTCCCGAGT
CCCCTGCACCTCATCCCGGATCTCCATTTCCCAACTTTTTATTGTCTAAGCACCCCCCCC
TCCACCCCCTCCTCTCTTCCTTCCCTTCCTCATTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-199, - strand, RNAz p=0.991721

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.991721

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-452, gnl|bosTau2|chr25 (24545681-24546116)
               

               
               1-452, gnl|Hg17|chr16 (29733487-29733935)
               

               
               1-452, gnl|Mm7|chr7 (123115251-123114838)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-452, gnl|bosTau2|chr25 (24545681-24546116)
               

               
               1-452, gnl|Hg17|chr16 (29733487-29733935)
               

               
               1-452, gnl|Mm7|chr7 (123115251-123114838)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-452, gnl\|bosTau2\|chr25 (24545681-24546116)
	1-452, gnl\|Hg17\|chr16 (29733487-29733935)
	1-452, gnl\|Mm7\|chr7 (123115251-123114838)