Non-Coding RNA Search

Ss1.1-rece06c_i5.5

Sequence:


               
               CAGTATGCCCTGTGGGGATATTTCATCCGCTCCTGGAGGACCCTCGCCGTTCTGGTTAAC
CTGCAGGGAACCGTGGTCTTTCTCTTATCTTTATTCATTCCTGAATCACCCCGTTGGTTA
TACTCCCAGGGTCGACTGCGAGAGGCTGAAGCAGCCCTGTACCTCATTGCCAGGAGGAAC
CGCCAGCTCAGGTGCACCTTCTCTCTAACACACCCGGCCAACAGGAGCTGCAAGGAAACC
GGAAGTTTCCTGGACCTGTTCCGCTACCGGGTCCTCTTGGGGCACACGCTGACCCTCATG
TTCATCTGGTTTGTGTGCAGTTTGGTGTATTATGGCCTAACTCTGAGCGCAGGTGATCTA
GGTGGAAATATTTATGCCAACTTGGCCCTGTCTGGCCTCATAGAGATTCCATCTTACCCC
ATCTGCATCTACTTGATTAACCAAAAATGGTTTGGTCGGAAGCGGACATTAGCAGCATTT
CTGTGCCTGGGAGGACTGGCTTGTCTTATTGTCATGTTTCTTCCAGAAAAAAGAGACACA
GGTGTGTTCGCCGTGGTGAACAGCCATTCCTTGTCCCTGCTGGGGAAGCTGACCATCAGC
GCTGCCTTCAACGTGGTCTATATCTACACCTCGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTATGCCCTGTGGGGATATTTCATCCGCTCCTGGAGGACCCTCGCCGTTCTGGTTAAC
CTGCAGGGAACCGTGGTCTTTCTCTTATCTTTATTCATTCCTGAATCACCCCGTTGGTTA
TACTCCCAGGGTCGACTGCGAGAGGCTGAAGCAGCCCTGTACCTCATTGCCAGGAGGAAC
CGCCAGCTCAGGTGCACCTTCTCTCTAACACACCCGGCCAACAGGAGCTGCAAGGAAACC
GGAAGTTTCCTGGACCTGTTCCGCTACCGGGTCCTCTTGGGGCACACGCTGACCCTCATG
TTCATCTGGTTTGTGTGCAGTTTGGTGTATTATGGCCTAACTCTGAGCGCAGGTGATCTA
GGTGGAAATATTTATGCCAACTTGGCCCTGTCTGGCCTCATAGAGATTCCATCTTACCCC
ATCTGCATCTACTTGATTAACCAAAAATGGTTTGGTCGGAAGCGGACATTAGCAGCATTT
CTGTGCCTGGGAGGACTGGCTTGTCTTATTGTCATGTTTCTTCCAGAAAAAAGAGACACA
GGTGTGTTCGCCGTGGTGAACAGCCATTCCTTGTCCCTGCTGGGGAAGCTGACCATCAGC
GCTGCCTTCAACGTGGTCTATATCTACACCTCGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29244200|ref|NP_808397.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29244200|ref|NP_808397.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               93-310, gnl|bosTau2|chr3 (22897712-22897929)
               

               
               93-310, gnl|Hg17|chr1 (116286029-116286246)
               

               
               93-310, gnl|Mm7|chr3 (101674937-101674720)
               


               
               534-636, gnl|bosTau2|chr3 (22924982-22925084)
               

               
               534-636, gnl|Hg17|chr1 (116317423-116317525)
               

               
               534-636, gnl|Mm7|chr3 (101659325-101659223)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-310, gnl|bosTau2|chr3 (22897712-22897929)
               

               
               93-310, gnl|Hg17|chr1 (116286029-116286246)
               

               
               93-310, gnl|Mm7|chr3 (101674937-101674720)
               


               
               534-636, gnl|bosTau2|chr3 (22924982-22925084)
               

               
               534-636, gnl|Hg17|chr1 (116317423-116317525)
               

               
               534-636, gnl|Mm7|chr3 (101659325-101659223)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               eep (0.122564)

	93-310, gnl\|bosTau2\|chr3 (22897712-22897929)
	93-310, gnl\|Hg17\|chr1 (116286029-116286246)
	93-310, gnl\|Mm7\|chr3 (101674937-101674720)

	534-636, gnl\|bosTau2\|chr3 (22924982-22925084)
	534-636, gnl\|Hg17\|chr1 (116317423-116317525)
	534-636, gnl\|Mm7\|chr3 (101659325-101659223)