Non-Coding RNA Search

Ss1.1-rece07c_f7.5

Sequence:


               
               GCCGCCGAGACCAAGATGGCCGGGAGAATCGCCTCCTTCCTAAAGAATGCCTGGGCCAAG
GAGCCGGTGCTGGTGGCGTCCTTCGCCATCGGGGGCCTCGCTATAATTCTGCCCTCCCTC
AGCCCCTACACCAACTACGCCATCAGGATCAACCGGGCCACACCCTACAACTACCCAGTG
CCCCTCCGAGATGATGGGAACATGCCCGACGTGCCCAGCCACCCCCAGGACCCCCAGGGC
CCCAGCCTGGAGTGGCTGAAGAACCTGTGAGCACCTCCGCTGGCGGGGAGAGAGGCCGCC
TCCCCAGCGGCCCCCAATAAAAATATGAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCGAGACCAAGATGGCCGGGAGAATCGCCTCCTTCCTAAAGAATGCCTGGGCCAAG
GAGCCGGTGCTGGTGGCGTCCTTCGCCATCGGGGGCCTCGCTATAATTCTGCCCTCCCTC
AGCCCCTACACCAACTACGCCATCAGGATCAACCGGGCCACACCCTACAACTACCCAGTG
CCCCTCCGAGATGATGGGAACATGCCCGACGTGCCCAGCCACCCCCAGGACCCCCAGGGC
CCCAGCCTGGAGTGGCTGAAGAACCTGTGAGCACCTCCGCTGGCGGGGAGAGAGGCCGCC
TCCCCAGCGGCCCCCAATAAAAATATGAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|346539|pir||S28248

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|346539|pir||S28248

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-322, - strand, RNAz p=0.662032

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-322, - strand, RNAz p=0.662032

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-384, gnl|bosTau2|chr16 (15938972-15938615)
               

               
               7-384, gnl|Hg17|chr19 (49493091-49493421)
               

               
               7-384, gnl|Mm7|chr1 (21083505-21084224)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-384, gnl|bosTau2|chr16 (15938972-15938615)
               

               
               7-384, gnl|Hg17|chr19 (49493091-49493421)
               

               
               7-384, gnl|Mm7|chr1 (21083505-21084224)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               mas (0.84122)
               

               
               ece (0.687916)
               

               
               fce (0.543183)
               

               
               nje (0.49776)
               

               
               nms (0.427716)
               

               
               nca (0.410621)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 26 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.84122)
               

               
               ece (0.687916)
               

               
               fce (0.543183)
               

               
               nje (0.49776)
               

               
               nms (0.427716)
               

               
               nca (0.410621)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               hlv (0.278513)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	7-384, gnl\|bosTau2\|chr16 (15938972-15938615)
	7-384, gnl\|Hg17\|chr19 (49493091-49493421)
	7-384, gnl\|Mm7\|chr1 (21083505-21084224)

	mas (0.84122)
	ece (0.687916)
	fce (0.543183)
	nje (0.49776)
	nms (0.427716)
	nca (0.410621)
	hyp (0.285673)
	pty (0.285429)
	lnt (0.284616)
	hlv (0.278513)
	nbm (0.198649)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	fhi (0.169578)
	eli (0.151814)
	cag (0.151194)
	ute (0.132784)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)
	jej (0.0989218)
	eje (0.0988338)