Non-Coding RNA Search

Ss1.1-rece07c_n20.5

Sequence:


               
               GATGAAAAGGCTCTCCTGGAGATGACTGAAGAAGTAGACTATGATGTAGATTCATATGCT
ACGCAACTTGAAGCTATTCTTGAGCAGAAAATAGACATTTTAACTGAGCTGCGGGATAAA
GTGAAATCTTTTCGTGCAGCTCTACAAGAGGAAGAACAGGCCAGCAAGCAAATCAACCCA
AAAAGACCCCGTGCCCTTTAAATCAGCATTTGCTGCTAACAGATCCCTGGAACCCTCGCT
ACTGTAACATACAATGGTTCAGCTATAAGGGCCATTTGACAGTTTGAAATTTTAAGTGTC
TGTGGAAAATGTCTTGTCTCTTCACCTGAATGACATTTCAATTTTGTGAAACACTCCTTT
GTCTAAAAAATGCTTCTACTCCAAGATGCACAACCAAGATTTGGGAATAGTGAAACATTT
TGTTTCATTTACCCAAATAGTGATTTACTTTTGGAGATCCTTGCCAATTTTATTTTCTGT
ATGATGAAGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAAAAGGCTCTCCTGGAGATGACTGAAGAAGTAGACTATGATGTAGATTCATATGCT
ACGCAACTTGAAGCTATTCTTGAGCAGAAAATAGACATTTTAACTGAGCTGCGGGATAAA
GTGAAATCTTTTCGTGCAGCTCTACAAGAGGAAGAACAGGCCAGCAAGCAAATCAACCCA
AAAAGACCCCGTGCCCTTTAAATCAGCATTTGCTGCTAACAGATCCCTGGAACCCTCGCT
ACTGTAACATACAATGGTTCAGCTATAAGGGCCATTTGACAGTTTGAAATTTTAAGTGTC
TGTGGAAAATGTCTTGTCTCTTCACCTGAATGACATTTCAATTTTGTGAAACACTCCTTT
GTCTAAAAAATGCTTCTACTCCAAGATGCACAACCAAGATTTGGGAATAGTGAAACATTT
TGTTTCATTTACCCAAATAGTGATTTACTTTTGGAGATCCTTGCCAATTTTATTTTCTGT
ATGATGAAGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55624272|ref|XP_517744.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55624272|ref|XP_517744.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               320-492, + strand, RNAz p=0.976713

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-492, + strand, RNAz p=0.976713

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC031828, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC031828, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               115-492, gnl|bosTau2|chr20 (4281061-4280684)
               

               
               115-492, gnl|Hg17|chr5 (61717067-61717443)
               

               
               115-492, gnl|Mm7|chr13 (104091646-104091249)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-492, gnl|bosTau2|chr20 (4281061-4280684)
               

               
               115-492, gnl|Hg17|chr5 (61717067-61717443)
               

               
               115-492, gnl|Mm7|chr13 (104091646-104091249)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               thg (0.126791)

	115-492, gnl\|bosTau2\|chr20 (4281061-4280684)
	115-492, gnl\|Hg17\|chr5 (61717067-61717443)
	115-492, gnl\|Mm7\|chr13 (104091646-104091249)