Non-Coding RNA Search

Ss1.1-rece08c_p20.5

Sequence:


               
               GATCTTCTGGGGAGGTTAACACCAACGTGGCCTTCTGCTCTGTGCTACGCAGCCGCCTGG
GAAACCACCCTCTGCTCTTCTCCGGAGAGGTAGATTGCACAGACCCCCAGGCTCCATCCA
CACAGCCCCCAGCCTGCTATGTGGAGCTCAAGACCTCCAAGGAGATGCACAGCCCTGGCC
AATGGAAGAGCTTCTACAGACACAAGCTCCTGAAATGGTGGGCTCAGTCGTTCCTCCTGG
GGGTCCCAAATGTCGTTGCTGGCTTCCGTACCCCAGAGGGTTTCATCTGCTCCCTCAAGA
CCTTTCCTACCATGGAGATGTTTGAACACGTCAGGAATGACCGTGATGGCTGGAACCCCT
CCGTGTGCATGAACTTCTGTGCCGCCTTCCTTAGCTTTGCCCAGAACACAGTTGTCCAGG
ATGACCCCAGGCTCGTCTACCTCTTCTCCTGGGAACCTGGCGGCCCAGTCACAGTGTCTG
AACATCGAGATGCACCCCATGCCTTCCTGCCTACATGGTACGTGGAGGCCATGACCCAGG
ACCTCCCCCCTCCCCCCAAGACACCCTCCCCCAAGGACTGATGCTTCACAGGGGCTGGTC
CTGTTTCTGTGCACAGATAAAGGCCTGTTTCTAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCTTCTGGGGAGGTTAACACCAACGTGGCCTTCTGCTCTGTGCTACGCAGCCGCCTGG
GAAACCACCCTCTGCTCTTCTCCGGAGAGGTAGATTGCACAGACCCCCAGGCTCCATCCA
CACAGCCCCCAGCCTGCTATGTGGAGCTCAAGACCTCCAAGGAGATGCACAGCCCTGGCC
AATGGAAGAGCTTCTACAGACACAAGCTCCTGAAATGGTGGGCTCAGTCGTTCCTCCTGG
GGGTCCCAAATGTCGTTGCTGGCTTCCGTACCCCAGAGGGTTTCATCTGCTCCCTCAAGA
CCTTTCCTACCATGGAGATGTTTGAACACGTCAGGAATGACCGTGATGGCTGGAACCCCT
CCGTGTGCATGAACTTCTGTGCCGCCTTCCTTAGCTTTGCCCAGAACACAGTTGTCCAGG
ATGACCCCAGGCTCGTCTACCTCTTCTCCTGGGAACCTGGCGGCCCAGTCACAGTGTCTG
AACATCGAGATGCACCCCATGCCTTCCTGCCTACATGGTACGTGGAGGCCATGACCCAGG
ACCTCCCCCCTCCCCCCAAGACACCCTCCCCCAAGGACTGATGCTTCACAGGGGCTGGTC
CTGTTTCTGTGCACAGATAAAGGCCTGTTTCTAGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               4-122, - strand, RNAz p=0.822378

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, - strand, RNAz p=0.822378

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               80-163, - strand, RNAmicro p=0.985372

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               80-163, - strand, RNAmicro p=0.985372

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               4-199, gnl|bosTau2|chr23 (23562182-23561987)
               

               
               4-199, gnl|canFam2|chr12 (4428147-4428403)
               

               
               4-199, gnl|danRer3|chrNA (152170310-152170567)
               

               
               4-199, gnl|echTel1|scaffold_297223 (8976-9236)
               

               
               4-199, gnl|fr1|chrUn (56090163-56089900)
               

               
               4-199, gnl|hg17|chr6 (32046352-32046610)
               

               
               4-199, gnl|Hg17|chr6 (32046557-32046362)
               

               
               4-199, gnl|loxAfr1|scaffold_5694 (73748-73490)
               

               
               4-199, gnl|mm7|chr17 (32934515-32934256)
               

               
               4-199, gnl|Mm7|chr17 (32934308-32934503)
               

               
               4-199, gnl|monDom2|scaffold_42 (17363958-17363700)
               

               
               4-199, gnl|oryCun1|scaffold_195381 (45873-46131)
               

               
               4-199, gnl|panTro1|chr5 (32449421-32449679)
               

               
               4-199, gnl|rheMac2|chr4 (31626276-31626534)
               

               
               4-199, gnl|rn3|chr20 (4094665-4094924)
               

               
               4-199, gnl|tetNig1|chr3 (9387419-9387151)
               

               
               4-199, gnl|xenTro1|scaffold_895 (40924-40652)
               


               
               425-636, gnl|bosTau2|chr23 (23561423-23561210)
               

               
               425-636, gnl|Hg17|chr6 (32045786-32045571)
               

               
               425-636, gnl|Mm7|chr17 (32935102-32935304)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-199, gnl|bosTau2|chr23 (23562182-23561987)
               

               
               4-199, gnl|canFam2|chr12 (4428147-4428403)
               

               
               4-199, gnl|danRer3|chrNA (152170310-152170567)
               

               
               4-199, gnl|echTel1|scaffold_297223 (8976-9236)
               

               
               4-199, gnl|fr1|chrUn (56090163-56089900)
               

               
               4-199, gnl|hg17|chr6 (32046352-32046610)
               

               
               4-199, gnl|Hg17|chr6 (32046557-32046362)
               

               
               4-199, gnl|loxAfr1|scaffold_5694 (73748-73490)
               

               
               4-199, gnl|mm7|chr17 (32934515-32934256)
               

               
               4-199, gnl|Mm7|chr17 (32934308-32934503)
               

               
               4-199, gnl|monDom2|scaffold_42 (17363958-17363700)
               

               
               4-199, gnl|oryCun1|scaffold_195381 (45873-46131)
               

               
               4-199, gnl|panTro1|chr5 (32449421-32449679)
               

               
               4-199, gnl|rheMac2|chr4 (31626276-31626534)
               

               
               4-199, gnl|rn3|chr20 (4094665-4094924)
               

               
               4-199, gnl|tetNig1|chr3 (9387419-9387151)
               

               
               4-199, gnl|xenTro1|scaffold_895 (40924-40652)
               


               
               425-636, gnl|bosTau2|chr23 (23561423-23561210)
               

               
               425-636, gnl|Hg17|chr6 (32045786-32045571)
               

               
               425-636, gnl|Mm7|chr17 (32935102-32935304)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               ece (0.229305)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)

	4-199, gnl\|bosTau2\|chr23 (23562182-23561987)
	4-199, gnl\|canFam2\|chr12 (4428147-4428403)
	4-199, gnl\|danRer3\|chrNA (152170310-152170567)
	4-199, gnl\|echTel1\|scaffold_297223 (8976-9236)
	4-199, gnl\|fr1\|chrUn (56090163-56089900)
	4-199, gnl\|hg17\|chr6 (32046352-32046610)
	4-199, gnl\|Hg17\|chr6 (32046557-32046362)
	4-199, gnl\|loxAfr1\|scaffold_5694 (73748-73490)
	4-199, gnl\|mm7\|chr17 (32934515-32934256)
	4-199, gnl\|Mm7\|chr17 (32934308-32934503)
	4-199, gnl\|monDom2\|scaffold_42 (17363958-17363700)
	4-199, gnl\|oryCun1\|scaffold_195381 (45873-46131)
	4-199, gnl\|panTro1\|chr5 (32449421-32449679)
	4-199, gnl\|rheMac2\|chr4 (31626276-31626534)
	4-199, gnl\|rn3\|chr20 (4094665-4094924)
	4-199, gnl\|tetNig1\|chr3 (9387419-9387151)
	4-199, gnl\|xenTro1\|scaffold_895 (40924-40652)

	425-636, gnl\|bosTau2\|chr23 (23561423-23561210)
	425-636, gnl\|Hg17\|chr6 (32045786-32045571)
	425-636, gnl\|Mm7\|chr17 (32935102-32935304)