Non-Coding RNA Search

Ss1.1-rece12c_c21.5

Sequence:


               
               TTTATATGCTCTTTTTACGTAAATAAGTTTTAATTTGTCCTTTAAAAAAAAAAGGTGAAA
AAAGAACAAGTTCTAGAAAACTGAAGCAACCTCTTATGTATACTAGATGCTTGATTAGGA
GGCGTTTTTAAATGTTTTCAATGTTATTACGTAGTAAATGGCACTATTATGAAGCTACTA
GTCCTTCCACAAGAGTCTTCAAGGACTGCCCTGTGTAACACTGTGACCGCCGTGTGTGTG
CTTAGACATGTAACATAGTTTCTTCAGTGGACAGCACTCAATCTATTCCGTAGTGATATT
GTAACAATACTGCCATTCCCTTCTACTGCACTGCCCAAGGTGTGTGTAGCACAAACAGTT
CTCATTACAAAGGACCAATTCCGAACTGAAAAGCTATGCAGAAGACAAGAACGATGCAAC
GCATGCGGCGGAACACACAGCATCTTGTCAAGCACTGTGCAACGGTCCCTTTTGCTCCCC
ACCTTGGTAGGCGACCGCTTTGCTGGACGGCAGCCGATGCTCCCCCACTGCGGCTGGTCT
TTGTCCCACTCACCTCCATGACCCATTTTCACTCCCAGCCCCCAGAAAGCAGGGATGCTC
TGAGTGAAGGGTCAGCGTCAAACACACCGAAACGAAATGCAGGGAAAGGAGGCATGAACC
TCATGCTCAGACCTGAGGCTCTCATGCCATGGTTTTTAACACCGCCAGGAGAATTCAGCA
GGGGCTGGGGAGACGCTTCCAACACAAGGTTGGCTGTTTCCTGATAAAACGGGGTTCCTG
TCTTGTTCTTTCCTCACCGGAGCAGAGGGGAGCCCTTTCACCTTTCGGCCCAGTTGTAGA
TGAGAGAAAATGCACAAGTCATTCAAATGATGTGCGATCAAGTACCAGTTTGAAAAGAAG
ATTCAAGCGAGAAGCCTTCCCGTTTCAAAGACCCAACCCTACCAGAGAGAGTGGACTGAC
TTTTGAAAATCCTTTGACTACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATATGCTCTTTTTACGTAAATAAGTTTTAATTTGTCCTTTAAAAAAAAAAGGTGAAA
AAAGAACAAGTTCTAGAAAACTGAAGCAACCTCTTATGTATACTAGATGCTTGATTAGGA
GGCGTTTTTAAATGTTTTCAATGTTATTACGTAGTAAATGGCACTATTATGAAGCTACTA
GTCCTTCCACAAGAGTCTTCAAGGACTGCCCTGTGTAACACTGTGACCGCCGTGTGTGTG
CTTAGACATGTAACATAGTTTCTTCAGTGGACAGCACTCAATCTATTCCGTAGTGATATT
GTAACAATACTGCCATTCCCTTCTACTGCACTGCCCAAGGTGTGTGTAGCACAAACAGTT
CTCATTACAAAGGACCAATTCCGAACTGAAAAGCTATGCAGAAGACAAGAACGATGCAAC
GCATGCGGCGGAACACACAGCATCTTGTCAAGCACTGTGCAACGGTCCCTTTTGCTCCCC
ACCTTGGTAGGCGACCGCTTTGCTGGACGGCAGCCGATGCTCCCCCACTGCGGCTGGTCT
TTGTCCCACTCACCTCCATGACCCATTTTCACTCCCAGCCCCCAGAAAGCAGGGATGCTC
TGAGTGAAGGGTCAGCGTCAAACACACCGAAACGAAATGCAGGGAAAGGAGGCATGAACC
TCATGCTCAGACCTGAGGCTCTCATGCCATGGTTTTTAACACCGCCAGGAGAATTCAGCA
GGGGCTGGGGAGACGCTTCCAACACAAGGTTGGCTGTTTCCTGATAAAACGGGGTTCCTG
TCTTGTTCTTTCCTCACCGGAGCAGAGGGGAGCCCTTTCACCTTTCGGCCCAGTTGTAGA
TGAGAGAAAATGCACAAGTCATTCAAATGATGTGCGATCAAGTACCAGTTTGAAAAGAAG
ATTCAAGCGAGAAGCCTTCCCGTTTCAAAGACCCAACCCTACCAGAGAGAGTGGACTGAC
TTTTGAAAATCCTTTGACTACCAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-844, gnl|bosTau2|chr5 (5204374-5205224)
               

               
               1-844, gnl|Hg17|chr12 (78346611-78347449)
               

               
               1-844, gnl|Mm7|chr10 (107961354-107960504)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-844, gnl|bosTau2|chr5 (5204374-5205224)
               

               
               1-844, gnl|Hg17|chr12 (78346611-78347449)
               

               
               1-844, gnl|Mm7|chr10 (107961354-107960504)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cbr (0.127975)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cbr (0.127975)

	1-844, gnl\|bosTau2\|chr5 (5204374-5205224)
	1-844, gnl\|Hg17\|chr12 (78346611-78347449)
	1-844, gnl\|Mm7\|chr10 (107961354-107960504)