Non-Coding RNA Search

Ss1.1-rece14c_a7.5.5

Sequence:


               
               AGCTACAGTCCCTTTTAGCAAAGCAACCACCAACTGCAGCTGGAAGGCCTGTGGACGCCT
CACCAAGAGTCCCAGGAGGCTCCCCTCGGACACCAAACAGATCTGTGTCATCCAATGTTG
CCAGCGTGTCACCCATCCCTGCTGGGTCAAAAAAAATTGATCCAAACATGAAAGCTGGAG
CTACAAGTGAAGGCGTCCTGGCAAATTTCTTCAATAGTTTGCTAAGTAAGAAGACTGGTT
CCCCAGGAGGCCCTGCTGTTGGTGGTGGTAGCCCTGGAGGCGGGGCCGGAGGCGGAAGCA
GTGGTTTGCCCCCATCTGCCAAAAAGTCAGGCCAGAAGCCTGTCCTGTCAGATGTTCATG
CAGAACTAGACAGAATTGCACGAAAACCTGTTACAGTTTCTTCTACAACACCTACATCTC
CTACAGAAGGAGAAGCTTCTTGAAGATACCAAATAAAGCCATTTATTCAGTTTTTGGGGA
TAATATAAACTTGCCTCTGCCTTCTCCTTCAAAAGTGGAATTAGGGAGCTGGAGTGCTTT
TTCAGATGGACTAAATTTATGTCTTTTTTGTGTGTGTGGTTGCCCATTTTTATAAAAGGG
AGCTATACAGAAAAAAGTTATTCTACACTATGTAGAATTTCTATTTGCATCGCCACTTTG
CATAAGGAAGTAATTTTGGATTTTGAAAAACTCAGATTTATAGATCTGAAATACAGCCAT
GTGAGCATATTCTAAAGGCTACTTAAAACATATAGGAGGGTTTGGGAAGGGCAGAAAATA
ATGTGCTTTGGGCATTTGACTGACTTGAAAGTCCAGGCTTATTTTAGTTAAGATTTAAAA
ATCATTTTAAAGAATTATGTTGTTAGCTTTTCTGAAAAAGAGAAAATGATCAGTTGTCAG
GTTTCCACACCAACATGGAATATGCGAGAAAACTATCAGATAGCATTTGTTATACTAGTC
ACTGTCTCAATCCATGATCCTGTAAGTTGTCATCACAATATGATTTAGAAATACTGGTTA
AGATTTGTTTCTTTAACTGAGAAGAAAAGAAAGCACACTGCTGAAATGTATAAAAGAAAA
ATGCAGAGGTTAAGATGTAAAGAGGTAACAGTCTTTGGATTTGTCTATATATATATATAT
ATACATATATATATATACACACACACATACACACACAGACATATATATATATGGCTCTGC
CTTAATATACCCCTATTTTGTTTGTGACTTTCAACTGTAATCAGTTAAAAGTATTTATTC
TCTGCATTCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTACAGTCCCTTTTAGCAAAGCAACCACCAACTGCAGCTGGAAGGCCTGTGGACGCCT
CACCAAGAGTCCCAGGAGGCTCCCCTCGGACACCAAACAGATCTGTGTCATCCAATGTTG
CCAGCGTGTCACCCATCCCTGCTGGGTCAAAAAAAATTGATCCAAACATGAAAGCTGGAG
CTACAAGTGAAGGCGTCCTGGCAAATTTCTTCAATAGTTTGCTAAGTAAGAAGACTGGTT
CCCCAGGAGGCCCTGCTGTTGGTGGTGGTAGCCCTGGAGGCGGGGCCGGAGGCGGAAGCA
GTGGTTTGCCCCCATCTGCCAAAAAGTCAGGCCAGAAGCCTGTCCTGTCAGATGTTCATG
CAGAACTAGACAGAATTGCACGAAAACCTGTTACAGTTTCTTCTACAACACCTACATCTC
CTACAGAAGGAGAAGCTTCTTGAAGATACCAAATAAAGCCATTTATTCAGTTTTTGGGGA
TAATATAAACTTGCCTCTGCCTTCTCCTTCAAAAGTGGAATTAGGGAGCTGGAGTGCTTT
TTCAGATGGACTAAATTTATGTCTTTTTTGTGTGTGTGGTTGCCCATTTTTATAAAAGGG
AGCTATACAGAAAAAAGTTATTCTACACTATGTAGAATTTCTATTTGCATCGCCACTTTG
CATAAGGAAGTAATTTTGGATTTTGAAAAACTCAGATTTATAGATCTGAAATACAGCCAT
GTGAGCATATTCTAAAGGCTACTTAAAACATATAGGAGGGTTTGGGAAGGGCAGAAAATA
ATGTGCTTTGGGCATTTGACTGACTTGAAAGTCCAGGCTTATTTTAGTTAAGATTTAAAA
ATCATTTTAAAGAATTATGTTGTTAGCTTTTCTGAAAAAGAGAAAATGATCAGTTGTCAG
GTTTCCACACCAACATGGAATATGCGAGAAAACTATCAGATAGCATTTGTTATACTAGTC
ACTGTCTCAATCCATGATCCTGTAAGTTGTCATCACAATATGATTTAGAAATACTGGTTA
AGATTTGTTTCTTTAACTGAGAAGAAAAGAAAGCACACTGCTGAAATGTATAAAAGAAAA
ATGCAGAGGTTAAGATGTAAAGAGGTAACAGTCTTTGGATTTGTCTATATATATATATAT
ATACATATATATATATACACACACACATACACACACAGACATATATATATATGGCTCTGC
CTTAATATACCCCTATTTTGTTTGTGACTTTCAACTGTAATCAGTTAAAAGTATTTATTC
TCTGCATTCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61827261|ref|XP_587458.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61827261|ref|XP_587458.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               172-375, - strand, RNAz p=0.994806

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-375, - strand, RNAz p=0.994806

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-497, gnl|bosTau2|chr18 (13651373-13650876)
               

               
               1-497, gnl|Hg17|chr3 (32546964-32543241)
               

               
               1-497, gnl|Mm7|chr9 (114369011-114374516)
               


               
               84-375, gnl|bosTau2|chr11 (38646530-38646232)
               

               
               84-375, gnl|Hg17|chr3 (32546127-32544940)
               

               
               84-375, gnl|Mm7|chr9 (114371675-114374393)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-497, gnl|bosTau2|chr18 (13651373-13650876)
               

               
               1-497, gnl|Hg17|chr3 (32546964-32543241)
               

               
               1-497, gnl|Mm7|chr9 (114369011-114374516)
               


               
               84-375, gnl|bosTau2|chr11 (38646530-38646232)
               

               
               84-375, gnl|Hg17|chr3 (32546127-32544940)
               

               
               84-375, gnl|Mm7|chr9 (114371675-114374393)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               tra (0.369276)
               

               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-497, gnl\|bosTau2\|chr18 (13651373-13650876)
	1-497, gnl\|Hg17\|chr3 (32546964-32543241)
	1-497, gnl\|Mm7\|chr9 (114369011-114374516)

	84-375, gnl\|bosTau2\|chr11 (38646530-38646232)
	84-375, gnl\|Hg17\|chr3 (32546127-32544940)
	84-375, gnl\|Mm7\|chr9 (114371675-114374393)

	tra (0.369276)
	fhi (0.339155)
	ece (0.229305)
	hea (0.204499)
	fcc (0.197785)
	sin (0.174948)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	eru (0.120048)
	eje (0.0988338)
	ldo (0.0970026)