Ss1.1-rece14c_j21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCCCGGAGCGCAAGTTGGCCCAGCCTACCCCGCCGGCGGCCATGGCGGGCACCCTAGA CCTGGACAAGGGCTGCACCGTGGAGGAGCTGCTCCGTGGCTGCATCGAAGCTTTCGATGA CTCCGGGAAGGTGCGGGACCCGCAGCTGGTGCGTATGTTCCTCATGATGCACCCCTGGTA CATCCCTTCCTCTCAGCTGGCGGCGAAACTGCTCCACATCTACCAACAATCCCGGAAGGA CAACTCCAGTTCGCTGCAGGTGAAAACATGCCATCTGGTCAGGTACTGGATCTCAGCATT CCCAGCGGAGTTTGATTTGAATCCTGAGCTCGCTGAGCAGATCAAGGAGCTGAAGGCTCT ACTAGACCAGGAAGGGAACCGCCGTCACAGCAGCCTCATCGACATCGAGAGCGTCCCCAC CTACAAGTGGAAGCGGCAGGTGACCCAGCGGAACCCGGTGGGACAGAAAAAGCGCAAGAT GTCCCTGCTGTTTGACCACTTGGAGCCCCTGGAGCTGGCGGAGCATCTTACGTACTTGGA GTATCGCTCTTTCTGCAAGATCCTGTTCCAGGACTATCACAGTTTCGTGACTCATGGCTG CACTGTGGACAACCCTGTCCTGGAGCGATTCATCTCCCTCTTCAACAGCGTCTCCCAGTG GGTGCAGCTCATGGTTCTCAGCAAGCCCACCGCGCCGCAGCGGGCCCTGGTCATCACGCA CTTCGTCCACGTAGCAGAGAAACTGCTGCAGCTGCAGAATTTCAACACGCTGATGGCGGT GGTCGGGGGCCTGAGCCACAGCTCCATCTCCCGCCTCAAGGAGACCCACAGCCACGTGAG CCCAGAGACCATCAAGCTCTGGGAAGGTCTGACGGAACTAGTGACAGCCACCGGCAACTA TGGCAACTACCGACGCCGGTTGGCAGCCTGTGTGGGTTTCCGCTTCCCCATCCTGGGTGT GCACCTCAAGGATCTGGTGGCCCTGCAGCTGGCACTGCCTGACTGGCTGGATCCCGCCCG GACCCGACTGAATGGGGCCAAGATGAAGCAGCTCTTCAGCATCCTGGAGGAGCTGGCCAT GGTGACCAGCCTTCGGCCCCCAGTGCAGGCCAATCCTGACCTGCTGAGCCTGCTCACGGT GTCTTTGGATCAGTATCAGACGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCCCGGAGCGCAAGTTGGCCCAGCCTACCCCGCCGGCGGCCATGGCGGGCACCCTAGA CCTGGACAAGGGCTGCACCGTGGAGGAGCTGCTCCGTGGCTGCATCGAAGCTTTCGATGA CTCCGGGAAGGTGCGGGACCCGCAGCTGGTGCGTATGTTCCTCATGATGCACCCCTGGTA CATCCCTTCCTCTCAGCTGGCGGCGAAACTGCTCCACATCTACCAACAATCCCGGAAGGA CAACTCCAGTTCGCTGCAGGTGAAAACATGCCATCTGGTCAGGTACTGGATCTCAGCATT CCCAGCGGAGTTTGATTTGAATCCTGAGCTCGCTGAGCAGATCAAGGAGCTGAAGGCTCT ACTAGACCAGGAAGGGAACCGCCGTCACAGCAGCCTCATCGACATCGAGAGCGTCCCCAC CTACAAGTGGAAGCGGCAGGTGACCCAGCGGAACCCGGTGGGACAGAAAAAGCGCAAGAT GTCCCTGCTGTTTGACCACTTGGAGCCCCTGGAGCTGGCGGAGCATCTTACGTACTTGGA GTATCGCTCTTTCTGCAAGATCCTGTTCCAGGACTATCACAGTTTCGTGACTCATGGCTG CACTGTGGACAACCCTGTCCTGGAGCGATTCATCTCCCTCTTCAACAGCGTCTCCCAGTG GGTGCAGCTCATGGTTCTCAGCAAGCCCACCGCGCCGCAGCGGGCCCTGGTCATCACGCA CTTCGTCCACGTAGCAGAGAAACTGCTGCAGCTGCAGAATTTCAACACGCTGATGGCGGT GGTCGGGGGCCTGAGCCACAGCTCCATCTCCCGCCTCAAGGAGACCCACAGCCACGTGAG CCCAGAGACCATCAAGCTCTGGGAAGGTCTGACGGAACTAGTGACAGCCACCGGCAACTA TGGCAACTACCGACGCCGGTTGGCAGCCTGTGTGGGTTTCCGCTTCCCCATCCTGGGTGT GCACCTCAAGGATCTGGTGGCCCTGCAGCTGGCACTGCCTGACTGGCTGGATCCCGCCCG GACCCGACTGAATGGGGCCAAGATGAAGCAGCTCTTCAGCATCCTGGAGGAGCTGGCCAT GGTGACCAGCCTTCGGCCCCCAGTGCAGGCCAATCCTGACCTGCTGAGCCTGCTCACGGT GTCTTTGGATCAGTATCAGACGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 105-222, - strand, RNAz p=0.517656 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 105-222, - strand, RNAz p=0.517656 |
| Aligned organism(s): 85 entry(ies) | More info |
| Aligned organism(s): 85 entry(ies) | Help | Less info |
| 88-222, gnl|bosTau2|chr29 (33892694-33892563) | |
| 88-222, gnl|canFam2|chr18 (55439919-55439783) | |
| 88-222, gnl|danRer3|chrNA (127855100-127854982) | |
| 88-222, gnl|dasNov1|scaffold_49641 (12206-12341) | |
| 88-222, gnl|echTel1|scaffold_299814 (1850-1726) | |
| 88-222, gnl|fr1|chrUn (231126681-231126561) | |
| 88-222, gnl|hg17|chr11 (64266047-64266182) | |
| 88-222, gnl|Hg17|chr11 (64266186-64266055) | |
| 88-222, gnl|loxAfr1|scaffold_122477 (3914-4050) | |
| 88-222, gnl|mm7|chr19 (6297227-6297093) | |
| 88-222, gnl|Mm7|chr19 (6297088-6297217) | |
| 88-222, gnl|monDom2|scaffold_70 (4234340-4234184) | |
| 88-222, gnl|oryCun1|scaffold_101992 (4530-4666) | |
| 88-222, gnl|panTro1|chr9 (65483862-65483997) | |
| 88-222, gnl|rheMac2|chr14 (9714633-9714498) | |
| 88-222, gnl|rn3|chr1 (209344178-209344043) | |
| 88-222, gnl|tetNig1|chrUn_random (23457228-23457097) | |
| 88-222, gnl|xenTro1|scaffold_145 (665037-664898) | |
| 281-414, gnl|bosTau2|chr29 (33891780-33891647) | |
| 281-414, gnl|canFam2|chr18 (55441159-55440996) | |
| 281-414, gnl|danRer3|chrNA (127856990-127856845) | |
| 281-414, gnl|echTel1|scaffold_299814 (2867-2691) | |
| 281-414, gnl|fr1|chrUn (231128456-231128294) | |
| 281-414, gnl|hg17|chr11 (64264973-64265136) | |
| 281-414, gnl|Hg17|chr11 (64265129-64264996) | |
| 281-414, gnl|loxAfr1|scaffold_125856 (4726-4893) | |
| 281-414, gnl|mm7|chr19 (6298221-6298065) | |
| 281-414, gnl|Mm7|chr19 (6298070-6298203) | |
| 281-414, gnl|oryCun1|scaffold_101992 (3674-3827) | |
| 281-414, gnl|panTro1|chr9 (65482788-65482951) | |
| 281-414, gnl|rheMac2|chr14 (9715703-9715540) | |
| 281-414, gnl|rn3|chr1 (209345202-209345046) | |
| 281-414, gnl|tetNig1|chrUn_random (23457729-23457583) | |
| 281-414, gnl|xenTro1|scaffold_145 (666068-665915) | |
| 415-572, gnl|bosTau2|chr29 (33890879-33890722) | |
| 415-572, gnl|canFam2|chr18 (55442079-55441967) | |
| 415-572, gnl|danRer3|chrNA (127860886-127860785) | |
| 415-572, gnl|dasNov1|scaffold_618 (52759-52859) | |
| 415-572, gnl|echTel1|scaffold_319425 (90336-90436) | |
| 415-572, gnl|fr1|chrUn (231128937-231128837) | |
| 415-572, gnl|hg17|chr11 (64264048-64264160) | |
| 415-572, gnl|Hg17|chr11 (64264211-64264049) | |
| 415-572, gnl|mm7|chr19 (6299105-6298993) | |
| 415-572, gnl|Mm7|chr19 (6298940-6299102) | |
| 415-572, gnl|monDom2|scaffold_139 (518307-518419) | |
| 415-572, gnl|oryCun1|scaffold_195372 (30326-30440) | |
| 415-572, gnl|panTro1|chr9 (65481866-65481978) | |
| 415-572, gnl|rheMac2|chr14 (9716626-9716514) | |
| 415-572, gnl|rn3|chr1 (209346094-209345982) | |
| 415-572, gnl|tetNig1|chrUn_random (23458192-23458092) | |
| 415-572, gnl|xenTro1|scaffold_145 (667646-667573) | |
| 738-856, gnl|bosTau2|chr18 (41086450-41086568) | |
| 738-856, gnl|canFam2|chr1 (117502371-117502246) | |
| 738-856, gnl|danRer3|chr18 (37894059-37894165) | |
| 738-856, gnl|dasNov1|scaffold_56523 (2114-1989) | |
| 738-856, gnl|echTel1|scaffold_319092 (66522-66647) | |
| 738-856, gnl|fr1|chrUn (97528803-97528928) | |
| 738-856, gnl|hg17|chr19 (43599531-43599656) | |
| 738-856, gnl|Hg17|chr19 (43599650-43599532) | |
| 738-856, gnl|loxAfr1|scaffold_156421 (251-125) | |
| 738-856, gnl|mm7|chr7 (26084684-26084560) | |
| 738-856, gnl|Mm7|chr7 (26084563-26084681) | |
| 738-856, gnl|monDom2|scaffold_12 (4918425-4918305) | |
| 738-856, gnl|oryCun1|scaffold_195372 (27922-28047) | |
| 738-856, gnl|panTro1|chr20 (40504660-40504785) | |
| 738-856, gnl|rheMac2|chr19 (44749450-44749575) | |
| 738-856, gnl|rn3|chr1 (84353796-84353672) | |
| 738-856, gnl|tetNig1|chr16 (6171490-6171615) | |
| 869-1141, gnl|bosTau2|chr18 (41087335-41087601) | |
| 869-1141, gnl|canFam2|chr1 (117503432-117503135) | |
| 869-1141, gnl|danRer3|chr18 (37884099-37884397) | |
| 869-1141, gnl|dasNov1|scaffold_56523 (3534-3226) | |
| 869-1141, gnl|echTel1|scaffold_319092 (65099-65387) | |
| 869-1141, gnl|fr1|chrUn (97528444-97528748) | |
| 869-1141, gnl|hg17|chr19 (43597324-43597622) | |
| 869-1141, gnl|Hg17|chr19 (43597591-43597325) | |
| 869-1141, gnl|loxAfr1|scaffold_6784 (18052-18346) | |
| 869-1141, gnl|mm7|chr7 (26085522-26085224) | |
| 869-1141, gnl|Mm7|chr7 (26085253-26085519) | |
| 869-1141, gnl|monDom2|scaffold_139 (516087-516389) | |
| 869-1141, gnl|oryCun1|scaffold_195372 (27046-27344) | |
| 869-1141, gnl|panTro1|chr20 (40502467-40502765) | |
| 869-1141, gnl|rheMac2|chr19 (44747047-44747345) | |
| 869-1141, gnl|rn3|chr1 (84354868-84354570) | |
| 869-1141, gnl|tetNig1|chr16 (6171132-6171412) |
| Aligned organism(s): 85 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-222, gnl|bosTau2|chr29 (33892694-33892563) | |
| 88-222, gnl|canFam2|chr18 (55439919-55439783) | |
| 88-222, gnl|danRer3|chrNA (127855100-127854982) | |
| 88-222, gnl|dasNov1|scaffold_49641 (12206-12341) | |
| 88-222, gnl|echTel1|scaffold_299814 (1850-1726) | |
| 88-222, gnl|fr1|chrUn (231126681-231126561) | |
| 88-222, gnl|hg17|chr11 (64266047-64266182) | |
| 88-222, gnl|Hg17|chr11 (64266186-64266055) | |
| 88-222, gnl|loxAfr1|scaffold_122477 (3914-4050) | |
| 88-222, gnl|mm7|chr19 (6297227-6297093) | |
| 88-222, gnl|Mm7|chr19 (6297088-6297217) | |
| 88-222, gnl|monDom2|scaffold_70 (4234340-4234184) | |
| 88-222, gnl|oryCun1|scaffold_101992 (4530-4666) | |
| 88-222, gnl|panTro1|chr9 (65483862-65483997) | |
| 88-222, gnl|rheMac2|chr14 (9714633-9714498) | |
| 88-222, gnl|rn3|chr1 (209344178-209344043) | |
| 88-222, gnl|tetNig1|chrUn_random (23457228-23457097) | |
| 88-222, gnl|xenTro1|scaffold_145 (665037-664898) | |
| 281-414, gnl|bosTau2|chr29 (33891780-33891647) | |
| 281-414, gnl|canFam2|chr18 (55441159-55440996) | |
| 281-414, gnl|danRer3|chrNA (127856990-127856845) | |
| 281-414, gnl|echTel1|scaffold_299814 (2867-2691) | |
| 281-414, gnl|fr1|chrUn (231128456-231128294) | |
| 281-414, gnl|hg17|chr11 (64264973-64265136) | |
| 281-414, gnl|Hg17|chr11 (64265129-64264996) | |
| 281-414, gnl|loxAfr1|scaffold_125856 (4726-4893) | |
| 281-414, gnl|mm7|chr19 (6298221-6298065) | |
| 281-414, gnl|Mm7|chr19 (6298070-6298203) | |
| 281-414, gnl|oryCun1|scaffold_101992 (3674-3827) | |
| 281-414, gnl|panTro1|chr9 (65482788-65482951) | |
| 281-414, gnl|rheMac2|chr14 (9715703-9715540) | |
| 281-414, gnl|rn3|chr1 (209345202-209345046) | |
| 281-414, gnl|tetNig1|chrUn_random (23457729-23457583) | |
| 281-414, gnl|xenTro1|scaffold_145 (666068-665915) | |
| 415-572, gnl|bosTau2|chr29 (33890879-33890722) | |
| 415-572, gnl|canFam2|chr18 (55442079-55441967) | |
| 415-572, gnl|danRer3|chrNA (127860886-127860785) | |
| 415-572, gnl|dasNov1|scaffold_618 (52759-52859) | |
| 415-572, gnl|echTel1|scaffold_319425 (90336-90436) | |
| 415-572, gnl|fr1|chrUn (231128937-231128837) | |
| 415-572, gnl|hg17|chr11 (64264048-64264160) | |
| 415-572, gnl|Hg17|chr11 (64264211-64264049) | |
| 415-572, gnl|mm7|chr19 (6299105-6298993) | |
| 415-572, gnl|Mm7|chr19 (6298940-6299102) | |
| 415-572, gnl|monDom2|scaffold_139 (518307-518419) | |
| 415-572, gnl|oryCun1|scaffold_195372 (30326-30440) | |
| 415-572, gnl|panTro1|chr9 (65481866-65481978) | |
| 415-572, gnl|rheMac2|chr14 (9716626-9716514) | |
| 415-572, gnl|rn3|chr1 (209346094-209345982) | |
| 415-572, gnl|tetNig1|chrUn_random (23458192-23458092) | |
| 415-572, gnl|xenTro1|scaffold_145 (667646-667573) | |
| 738-856, gnl|bosTau2|chr18 (41086450-41086568) | |
| 738-856, gnl|canFam2|chr1 (117502371-117502246) | |
| 738-856, gnl|danRer3|chr18 (37894059-37894165) | |
| 738-856, gnl|dasNov1|scaffold_56523 (2114-1989) | |
| 738-856, gnl|echTel1|scaffold_319092 (66522-66647) | |
| 738-856, gnl|fr1|chrUn (97528803-97528928) | |
| 738-856, gnl|hg17|chr19 (43599531-43599656) | |
| 738-856, gnl|Hg17|chr19 (43599650-43599532) | |
| 738-856, gnl|loxAfr1|scaffold_156421 (251-125) | |
| 738-856, gnl|mm7|chr7 (26084684-26084560) | |
| 738-856, gnl|Mm7|chr7 (26084563-26084681) | |
| 738-856, gnl|monDom2|scaffold_12 (4918425-4918305) | |
| 738-856, gnl|oryCun1|scaffold_195372 (27922-28047) | |
| 738-856, gnl|panTro1|chr20 (40504660-40504785) | |
| 738-856, gnl|rheMac2|chr19 (44749450-44749575) | |
| 738-856, gnl|rn3|chr1 (84353796-84353672) | |
| 738-856, gnl|tetNig1|chr16 (6171490-6171615) | |
| 869-1141, gnl|bosTau2|chr18 (41087335-41087601) | |
| 869-1141, gnl|canFam2|chr1 (117503432-117503135) | |
| 869-1141, gnl|danRer3|chr18 (37884099-37884397) | |
| 869-1141, gnl|dasNov1|scaffold_56523 (3534-3226) | |
| 869-1141, gnl|echTel1|scaffold_319092 (65099-65387) | |
| 869-1141, gnl|fr1|chrUn (97528444-97528748) | |
| 869-1141, gnl|hg17|chr19 (43597324-43597622) | |
| 869-1141, gnl|Hg17|chr19 (43597591-43597325) | |
| 869-1141, gnl|loxAfr1|scaffold_6784 (18052-18346) | |
| 869-1141, gnl|mm7|chr7 (26085522-26085224) | |
| 869-1141, gnl|Mm7|chr7 (26085253-26085519) | |
| 869-1141, gnl|monDom2|scaffold_139 (516087-516389) | |
| 869-1141, gnl|oryCun1|scaffold_195372 (27046-27344) | |
| 869-1141, gnl|panTro1|chr20 (40502467-40502765) | |
| 869-1141, gnl|rheMac2|chr19 (44747047-44747345) | |
| 869-1141, gnl|rn3|chr1 (84354868-84354570) | |
| 869-1141, gnl|tetNig1|chr16 (6171132-6171412) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| cty (0.10408) |