Non-Coding RNA Search

Ss1.1-rece14c_k19.5

Sequence:


               
               CAGGCGGACTTGAGAAGGGGGCTGGAAAAATGGAGGTGCCGCGCCTGGATCATGCCCTCA
ACAGCCCTACCAGTCCCTGTGAGGAGGTGATCAAAAACCTCAGCCTGGAGGCCATTCAGC
TGTGCGACCGGGACGGGAACAAATCACAAGACAGTGGCATAGCAGAGATGGAAGAACTTC
CTGTACCACATAACATCAAAATAAGCAATATCACATGTGACTCATTCAAGATTTCATGGG
AAATGGATTCAAAATCAAAGGACCGTATTACACACTATTTCATTGACCTCAATAAGAAAG
AGAACAAGAACTCCAATAAATTTAAACACAAGGATGTTCCAACAAAACTCGTGGCAAAAG
CTGTTCCTTTGCCGATGACTGTACGTGGACACTGGTTTTTGAGCCCAAGAACTGAGTATA
CAGTAGCAGTGCAGACTGCCTCAAAACAAGTCGACGGTGATTATGTTGTGTCTGAATGGA
GTGAAATTATAGAATTCTGCACAGCAGATTATTCAAAAGTTCATCTCACACAGCTATTGG
AGAAGGCTGAAGTGATTTCAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCGGACTTGAGAAGGGGGCTGGAAAAATGGAGGTGCCGCGCCTGGATCATGCCCTCA
ACAGCCCTACCAGTCCCTGTGAGGAGGTGATCAAAAACCTCAGCCTGGAGGCCATTCAGC
TGTGCGACCGGGACGGGAACAAATCACAAGACAGTGGCATAGCAGAGATGGAAGAACTTC
CTGTACCACATAACATCAAAATAAGCAATATCACATGTGACTCATTCAAGATTTCATGGG
AAATGGATTCAAAATCAAAGGACCGTATTACACACTATTTCATTGACCTCAATAAGAAAG
AGAACAAGAACTCCAATAAATTTAAACACAAGGATGTTCCAACAAAACTCGTGGCAAAAG
CTGTTCCTTTGCCGATGACTGTACGTGGACACTGGTTTTTGAGCCCAAGAACTGAGTATA
CAGTAGCAGTGCAGACTGCCTCAAAACAAGTCGACGGTGATTATGTTGTGTCTGAATGGA
GTGAAATTATAGAATTCTGCACAGCAGATTATTCAAAAGTTCATCTCACACAGCTATTGG
AGAAGGCTGAAGTGATTTCAGGAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q68DF3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68DF3_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               136-411, gnl|bosTau2|chr26 (792276-792007)
               

               
               136-411, gnl|Hg17|chr10 (60664070-60666321)
               

               
               136-411, gnl|Mm7|chr10 (70173234-70171219)
               


               
               421-564, gnl|bosTau2|chr26 (789913-789770)
               

               
               421-564, gnl|Hg17|chr10 (60666337-60668410)
               

               
               421-564, gnl|Mm7|chr10 (70171190-70167450)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-411, gnl|bosTau2|chr26 (792276-792007)
               

               
               136-411, gnl|Hg17|chr10 (60664070-60666321)
               

               
               136-411, gnl|Mm7|chr10 (70173234-70171219)
               


               
               421-564, gnl|bosTau2|chr26 (789913-789770)
               

               
               421-564, gnl|Hg17|chr10 (60666337-60668410)
               

               
               421-564, gnl|Mm7|chr10 (70171190-70167450)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.415628)
               

               
               ece (0.229305)
               

               
               cje (0.165235)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               ece (0.229305)
               

               
               cje (0.165235)

	136-411, gnl\|bosTau2\|chr26 (792276-792007)
	136-411, gnl\|Hg17\|chr10 (60664070-60666321)
	136-411, gnl\|Mm7\|chr10 (70173234-70171219)

	421-564, gnl\|bosTau2\|chr26 (789913-789770)
	421-564, gnl\|Hg17\|chr10 (60666337-60668410)
	421-564, gnl\|Mm7\|chr10 (70171190-70167450)