Non-Coding RNA Search

Ss1.1-rece16c_a17.5

Sequence:


               
               AGCTGGAGGACCTGGTGCACTTCTCTGTGTCCGAGTTGCCTAGTCGCGGCTACGGCGTCA
TGGAGGAGATTCGACGGCAGGGCAAGCTGTGCGACGTGACGCTCAAGATTGGGGACCACA
AATTCAGTGCTCACCGGATCGTCTTAGCAGCCTCAATCCCGTACTTCCACGCTATGTTTA
CAAATGACATGATGGAATGCAAGCAGGATGAGATTGTAATGCAAGGAATGGACCCAAGTG
CCCTGGAAGCTCTGATCAACTTTGCCTACAACGGCCACCTTGCCATTGACCAACAAAATG
TCCAGTCGTTGCTGATGGGGGCGAGTTTCCTGCAACTGCAGAGCATTAAAGACGCCTGCT
GCACATTCCTCCGAGAACGGCTCCATCCCAAAAACTGCCTGGGTGTGCGTCAGTTTGCTG
AGACAATGATGTGTGCCGTGCTGTATGATGCAGCCAACAGCTTCATCCACCAGCACTTTG
TGGAGGTGTCCATGTCGGAGGAATTCCTGGCCCTGCCCTTGGAAGATGTGCTTGAGCTGG
TGTCTCGGGACGAGCTGAATGTGAAATCAGAAGAGCAGGTCTTTGAGGCAGCATTGGCCT
GGGTCAGATACGACCGGGAACAGAGGGGGCCCTACCTGCCTGAGCTGCTGTCCAATATCC
GCCTGCCCCTCTGCCGGCCCCAGTTCCTGTCAGACCGAGTGCAGCAGGATGATCTGGTGC
GTTGCTGCCACAAATGCAGGGACCTGGTAGATGAAGCAAAGGACTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGGAGGACCTGGTGCACTTCTCTGTGTCCGAGTTGCCTAGTCGCGGCTACGGCGTCA
TGGAGGAGATTCGACGGCAGGGCAAGCTGTGCGACGTGACGCTCAAGATTGGGGACCACA
AATTCAGTGCTCACCGGATCGTCTTAGCAGCCTCAATCCCGTACTTCCACGCTATGTTTA
CAAATGACATGATGGAATGCAAGCAGGATGAGATTGTAATGCAAGGAATGGACCCAAGTG
CCCTGGAAGCTCTGATCAACTTTGCCTACAACGGCCACCTTGCCATTGACCAACAAAATG
TCCAGTCGTTGCTGATGGGGGCGAGTTTCCTGCAACTGCAGAGCATTAAAGACGCCTGCT
GCACATTCCTCCGAGAACGGCTCCATCCCAAAAACTGCCTGGGTGTGCGTCAGTTTGCTG
AGACAATGATGTGTGCCGTGCTGTATGATGCAGCCAACAGCTTCATCCACCAGCACTTTG
TGGAGGTGTCCATGTCGGAGGAATTCCTGGCCCTGCCCTTGGAAGATGTGCTTGAGCTGG
TGTCTCGGGACGAGCTGAATGTGAAATCAGAAGAGCAGGTCTTTGAGGCAGCATTGGCCT
GGGTCAGATACGACCGGGAACAGAGGGGGCCCTACCTGCCTGAGCTGCTGTCCAATATCC
GCCTGCCCCTCTGCCGGCCCCAGTTCCTGTCAGACCGAGTGCAGCAGGATGATCTGGTGC
GTTGCTGCCACAAATGCAGGGACCTGGTAGATGAAGCAAAGGACTATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47199488|emb|CAF88709.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47199488|emb|CAF88709.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               284-403, - strand, RNAz p=0.979952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-403, - strand, RNAz p=0.979952

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               85-488, gnl|bosTau2|chr16 (41845181-41845584)
               

               
               85-488, gnl|Hg17|chr1 (170434682-170435085)
               

               
               85-488, gnl|Mm7|chr1 (161071992-161071589)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-488, gnl|bosTau2|chr16 (41845181-41845584)
               

               
               85-488, gnl|Hg17|chr1 (170434682-170435085)
               

               
               85-488, gnl|Mm7|chr1 (161071992-161071589)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	85-488, gnl\|bosTau2\|chr16 (41845181-41845584)
	85-488, gnl\|Hg17\|chr1 (170434682-170435085)
	85-488, gnl\|Mm7\|chr1 (161071992-161071589)