Ss1.1-rece16c_l16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAGGCAAAAGAAGGGGAACGTGGCCCACAAACACTGGGTTGGACCTTCGAATTTGGTC AAGTGCAAGCCCTGTCCCGCGATACAGTCCGCCATGGTCTGCGGCTCTGATGGCCACACC TATACATCCAAGTGCAAGTTGGAGTTCCATGCTTGTTCCACTGGCAAGAGTCTCACCACC CTCTGTGATGGGCCCTGTCCGTGTCTCCCGGAACCCGAGCCGCCAAAACACAAGGCAGAA AAGAATGCCTGCACGGACAAGGAGTTGAGGAACCTCGCTTCCCGGCTCAAAGACTGGTTC GGGGCGCTTCATGAGGATGCCAACAGAGTCATCAAGCCCACCAGCTCCGACGCAGCCCAA GGCAGGTTTGACACCAGCATCCTGCCCATCTGCAAGGACTCCTTGGGCTGGATGTTCAAC AAGTGGGACATGAACTACGACCTCCTGCTTGACCACTCAGAGATCAACGCCATCTACCTG GATAAGTACGAGCCCGGTATCAAGCCTCTCTTCAATTCGTGTGACTCCTTTAAGGATGGC AAGCTCTCCAACAATGAGTGGTGCTACTGCTTCCAGAAACCTGGAGGTCTCCCTTGCCAG AATGAAATGAACAGGATTCAGAAGTTGAGCAAAGGAAAAAGCCTGTGGGGAGCATTCATA CCTCGGTGTAATGAGGAGGGCTATTACAAAGCCACTCAGTGCCACGGCAGCACAGGGCAG TGCTGGTGTGTGGACAAGTACGGAAACGAGCTCGCTGGCTCCAGGAAACAGGGTGCTGTG AGCTGTGAAGAGGAGCAGGAAACTTCAGGGGATTTTGGCAGCGGCGGCTCTGTCGTCCTC CTGGATGACCTGGAGGATGAACGGGAGCTGGGCCCCAAGGACAAGCGGGGGAAGGCAAGG GTGCACATCCGGGCAGTTACGGAGGATGATGAGGACGAGGACGACGACAAGGAGGATGAG GTTGGGTACATATGGTAGTCCCCACAGGGAAGAGGACCCGAGGCTTGCACACAATGGCAA GTCACTTCCCGTTCCTGCATTTGTATCTAAGACGCCACAGCACACGGCCTCGTCTCCACT GTTGCCCTCTCTACCCAACCTGAGGTTTGGAAGACAACTCCTTGTCCCCAGAGCATTCTG ACTCTGCATACGGTGTGTGGGAAGAAGAACGTTATGTTTTGGTTGTTTAGACAGGGGAAT GGCTGGCTGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAGGCAAAAGAAGGGGAACGTGGCCCACAAACACTGGGTTGGACCTTCGAATTTGGTC AAGTGCAAGCCCTGTCCCGCGATACAGTCCGCCATGGTCTGCGGCTCTGATGGCCACACC TATACATCCAAGTGCAAGTTGGAGTTCCATGCTTGTTCCACTGGCAAGAGTCTCACCACC CTCTGTGATGGGCCCTGTCCGTGTCTCCCGGAACCCGAGCCGCCAAAACACAAGGCAGAA AAGAATGCCTGCACGGACAAGGAGTTGAGGAACCTCGCTTCCCGGCTCAAAGACTGGTTC GGGGCGCTTCATGAGGATGCCAACAGAGTCATCAAGCCCACCAGCTCCGACGCAGCCCAA GGCAGGTTTGACACCAGCATCCTGCCCATCTGCAAGGACTCCTTGGGCTGGATGTTCAAC AAGTGGGACATGAACTACGACCTCCTGCTTGACCACTCAGAGATCAACGCCATCTACCTG GATAAGTACGAGCCCGGTATCAAGCCTCTCTTCAATTCGTGTGACTCCTTTAAGGATGGC AAGCTCTCCAACAATGAGTGGTGCTACTGCTTCCAGAAACCTGGAGGTCTCCCTTGCCAG AATGAAATGAACAGGATTCAGAAGTTGAGCAAAGGAAAAAGCCTGTGGGGAGCATTCATA CCTCGGTGTAATGAGGAGGGCTATTACAAAGCCACTCAGTGCCACGGCAGCACAGGGCAG TGCTGGTGTGTGGACAAGTACGGAAACGAGCTCGCTGGCTCCAGGAAACAGGGTGCTGTG AGCTGTGAAGAGGAGCAGGAAACTTCAGGGGATTTTGGCAGCGGCGGCTCTGTCGTCCTC CTGGATGACCTGGAGGATGAACGGGAGCTGGGCCCCAAGGACAAGCGGGGGAAGGCAAGG GTGCACATCCGGGCAGTTACGGAGGATGATGAGGACGAGGACGACGACAAGGAGGATGAG GTTGGGTACATATGGTAGTCCCCACAGGGAAGAGGACCCGAGGCTTGCACACAATGGCAA GTCACTTCCCGTTCCTGCATTTGTATCTAAGACGCCACAGCACACGGCCTCGTCTCCACT GTTGCCCTCTCTACCCAACCTGAGGTTTGGAAGACAACTCCTTGTCCCCAGAGCATTCTG ACTCTGCATACGGTGTGTGGGAAGAAGAACGTTATGTTTTGGTTGTTTAGACAGGGGAAT GGCTGGCTGAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 3-132, gnl|bosTau2|chr7 (33521836-33521707) | |
| 3-132, gnl|Hg17|chr5 (136476152-136476023) | |
| 3-132, gnl|Mm7|chr13 (56648350-56648221) | |
| 357-588, gnl|bosTau2|chr7 (33319799-33320031) | |
| 357-588, gnl|canFam2|chr11 (27760405-27760649) | |
| 357-588, gnl|canFam2|chr15 (65425840-65426095) | |
| 357-588, gnl|danRer3|chr1 (17089355-17089076) | |
| 357-588, gnl|danRer3|chr23 (53218803-53218559) | |
| 357-588, gnl|dasNov1|scaffold_25468 (712-968) | |
| 357-588, gnl|dasNov1|scaffold_43692 (2716-2960) | |
| 357-588, gnl|echTel1|scaffold_240167 (3681-3934) | |
| 357-588, gnl|echTel1|scaffold_306769 (50850-51094) | |
| 357-588, gnl|fr1|chrUn (286093133-286093393) | |
| 357-588, gnl|fr1|chrUn (286093132-286093363) | |
| 357-588, gnl|galGal2|chr13 (13406659-13406903) | |
| 357-588, gnl|galGal2|chr4 (25025034-25025289) | |
| 357-588, gnl|hg17|chr4 (168050378-168050634) | |
| 357-588, gnl|hg17|chr5 (136352003-136352247) | |
| 357-588, gnl|Hg17|chr5 (136352240-136352008) | |
| 357-588, gnl|loxAfr1|scaffold_126394 (4627-4396) | |
| 357-588, gnl|loxAfr1|scaffold_126394 (4631-4387) | |
| 357-588, gnl|mm7|chr13 (56531855-56532098) | |
| 357-588, gnl|Mm7|chr13 (56532092-56531860) | |
| 357-588, gnl|mm7|chr8 (61752257-61752004) | |
| 357-588, gnl|monDom2|scaffold_6 (106997032-106996787) | |
| 357-588, gnl|monDom2|scaffold_9 (41981719-41981975) | |
| 357-588, gnl|oryCun1|scaffold_183137 (97042-97290) | |
| 357-588, gnl|oryCun1|scaffold_69038 (4328-4073) | |
| 357-588, gnl|panTro1|chr3_random (24710828-24710573) | |
| 357-588, gnl|panTro1|chr4 (142946132-142946376) | |
| 357-588, gnl|rheMac2|chr5 (158899930-158900185) | |
| 357-588, gnl|rheMac2|chr6 (133407967-133408211) | |
| 357-588, gnl|rn3|chr16 (29347312-29347565) | |
| 357-588, gnl|rn3|chr17 (13201500-13201257) | |
| 357-588, gnl|tetNig1|chr1 (238938-238690) | |
| 357-588, gnl|tetNig1|chr1 (238942-238711) | |
| 357-588, gnl|xenTro1|scaffold_25 (3519171-3518921) | |
| 357-588, gnl|xenTro1|scaffold_25 (3519168-3518924) | |
| 365-573, gnl|bosTau2|chr28 (21000618-21000826) | |
| 365-573, gnl|Hg17|chr10 (73496884-73496676) | |
| 365-573, gnl|Mm7|chr10 (59645029-59645237) | |
| 787-1212, gnl|bosTau2|chr7 (33342233-33342654) | |
| 787-1212, gnl|Hg17|chr5 (136342433-136341991) | |
| 787-1212, gnl|Mm7|chr13 (56521027-56520591) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-132, gnl|bosTau2|chr7 (33521836-33521707) | |
| 3-132, gnl|Hg17|chr5 (136476152-136476023) | |
| 3-132, gnl|Mm7|chr13 (56648350-56648221) | |
| 357-588, gnl|bosTau2|chr7 (33319799-33320031) | |
| 357-588, gnl|canFam2|chr11 (27760405-27760649) | |
| 357-588, gnl|canFam2|chr15 (65425840-65426095) | |
| 357-588, gnl|danRer3|chr1 (17089355-17089076) | |
| 357-588, gnl|danRer3|chr23 (53218803-53218559) | |
| 357-588, gnl|dasNov1|scaffold_25468 (712-968) | |
| 357-588, gnl|dasNov1|scaffold_43692 (2716-2960) | |
| 357-588, gnl|echTel1|scaffold_240167 (3681-3934) | |
| 357-588, gnl|echTel1|scaffold_306769 (50850-51094) | |
| 357-588, gnl|fr1|chrUn (286093133-286093393) | |
| 357-588, gnl|fr1|chrUn (286093132-286093363) | |
| 357-588, gnl|galGal2|chr13 (13406659-13406903) | |
| 357-588, gnl|galGal2|chr4 (25025034-25025289) | |
| 357-588, gnl|hg17|chr4 (168050378-168050634) | |
| 357-588, gnl|hg17|chr5 (136352003-136352247) | |
| 357-588, gnl|Hg17|chr5 (136352240-136352008) | |
| 357-588, gnl|loxAfr1|scaffold_126394 (4627-4396) | |
| 357-588, gnl|loxAfr1|scaffold_126394 (4631-4387) | |
| 357-588, gnl|mm7|chr13 (56531855-56532098) | |
| 357-588, gnl|Mm7|chr13 (56532092-56531860) | |
| 357-588, gnl|mm7|chr8 (61752257-61752004) | |
| 357-588, gnl|monDom2|scaffold_6 (106997032-106996787) | |
| 357-588, gnl|monDom2|scaffold_9 (41981719-41981975) | |
| 357-588, gnl|oryCun1|scaffold_183137 (97042-97290) | |
| 357-588, gnl|oryCun1|scaffold_69038 (4328-4073) | |
| 357-588, gnl|panTro1|chr3_random (24710828-24710573) | |
| 357-588, gnl|panTro1|chr4 (142946132-142946376) | |
| 357-588, gnl|rheMac2|chr5 (158899930-158900185) | |
| 357-588, gnl|rheMac2|chr6 (133407967-133408211) | |
| 357-588, gnl|rn3|chr16 (29347312-29347565) | |
| 357-588, gnl|rn3|chr17 (13201500-13201257) | |
| 357-588, gnl|tetNig1|chr1 (238938-238690) | |
| 357-588, gnl|tetNig1|chr1 (238942-238711) | |
| 357-588, gnl|xenTro1|scaffold_25 (3519171-3518921) | |
| 357-588, gnl|xenTro1|scaffold_25 (3519168-3518924) | |
| 365-573, gnl|bosTau2|chr28 (21000618-21000826) | |
| 365-573, gnl|Hg17|chr10 (73496884-73496676) | |
| 365-573, gnl|Mm7|chr10 (59645029-59645237) | |
| 787-1212, gnl|bosTau2|chr7 (33342233-33342654) | |
| 787-1212, gnl|Hg17|chr5 (136342433-136341991) | |
| 787-1212, gnl|Mm7|chr13 (56521027-56520591) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| ece (0.229305) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| ece (0.229305) | |
| pgl (0.118483) | |
| ecc (0.115035) |