Non-Coding RNA Search

Ss1.1-rece16c_o12.5

Sequence:


               
               CACTGGTTTATTATAGTCAGTATTCTAGACCCTTTCCTGGCTTCCAGGTTTCATATTTAT
TTATTATGTTTAATATTTTGGTTCTTAGTTCTTAGGGAAATCAAGAAGTTGTGGAACCTC
TTTTTAATATCTCACAGAGAAAAAAATTCAGAGTATGTTTATAACTTTTTTGTTTTAACA
GCCTGTGTATTTAAATCATTGCTAGAGTTAGTTGATTATTTAAGAATGTAAAAACTAGTT
GCTCTATGGCAGATTGCATTTATTAAAAACGTTTCATTGTAGCATGCAGAGTCATGGCTT
GGACTCAGGAAGACTGATCCAGTACTTTCAGATTGGGGTGTTTTGCTGTCCAATTGCATA
CAATAATAAACAATTATTCTTATAATATAAGCTTACCTCAGTCATGTCTTTATGTATGAA
ATTGTTCCAGTTCTCTCATTTTGGAGCATCCAAATTTTTCAGCTTTTTTTGCCCTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGGTTTATTATAGTCAGTATTCTAGACCCTTTCCTGGCTTCCAGGTTTCATATTTAT
TTATTATGTTTAATATTTTGGTTCTTAGTTCTTAGGGAAATCAAGAAGTTGTGGAACCTC
TTTTTAATATCTCACAGAGAAAAAAATTCAGAGTATGTTTATAACTTTTTTGTTTTAACA
GCCTGTGTATTTAAATCATTGCTAGAGTTAGTTGATTATTTAAGAATGTAAAAACTAGTT
GCTCTATGGCAGATTGCATTTATTAAAAACGTTTCATTGTAGCATGCAGAGTCATGGCTT
GGACTCAGGAAGACTGATCCAGTACTTTCAGATTGGGGTGTTTTGCTGTCCAATTGCATA
CAATAATAAACAATTATTCTTATAATATAAGCTTACCTCAGTCATGTCTTTATGTATGAA
ATTGTTCCAGTTCTCTCATTTTGGAGCATCCAAATTTTTCAGCTTTTTTTGCCCTTTTGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-479, gnl|bosTau2|chr14 (14161543-14162049)
               

               
               1-479, gnl|Hg17|chr8 (103287262-103286756)
               

               
               1-479, gnl|Mm7|chr15 (38035678-38035197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr14 (14161543-14162049)
               

               
               1-479, gnl|Hg17|chr8 (103287262-103286756)
               

               
               1-479, gnl|Mm7|chr15 (38035678-38035197)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               kid (0.259471)
               

               
               ece (0.229305)
               

               
               fco (0.157208)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               ece (0.229305)
               

               
               fco (0.157208)
               

               
               sug (0.127291)

	1-479, gnl\|bosTau2\|chr14 (14161543-14162049)
	1-479, gnl\|Hg17\|chr8 (103287262-103286756)
	1-479, gnl\|Mm7\|chr15 (38035678-38035197)