Non-Coding RNA Search

Ss1.1-rece17c_a3.5

Sequence:


               
               CTCATGTTCAAGGCCGAGACGGGGAGCTGGGCAGCCAAGCTGCCGTCTGCGCTGCTTTTC
GGCTTGACAGGTAACACAGCTCCGTGTCAGGACTGCAGCGATTCAGAAACAAGCACAGCC
TCCCCACTGAACTCTCCTCCTGCTAATCTGTATAATCAGCTAATTTAACAGTACTGTAAT
CAGACTGCCTGTGACTACAGTAAAAGCCCACTAATTCAGACCTTAGAGAAAACCCACAAC
TCCAGATCATTCGTGGAATCTGCTATTCTCGCTCGGCGGAAGTCTTTGAAATATTCTTCC
CGTTAGTCAGTGTTCAGGGTCCTATGTGTAAGAGGGGACCGAGTTTAAAAGGAGTACCTT
TTGCAAATAAAAGGCTCAAGACATTAAGAATCCCCTCACCGTGCCTTCAGCTTTGGGGTT
GAGCAGTTGTCGTTTGTTCCTTCTCCGCTGTGGGGATGTTGGCTCTGGCAGCTTTCCATT
CTCCTCCCTTCTTTGCTCTATGAATACAATAGTTTGTGAACTAAACTGCAATTTACAGTA
ATACAACTGTGTCTCTTGCTAACTAGTCTGCAAAGCAGATGTTTTCGCTATCAGACTGGC
CGCTCCCATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATGTTCAAGGCCGAGACGGGGAGCTGGGCAGCCAAGCTGCCGTCTGCGCTGCTTTTC
GGCTTGACAGGTAACACAGCTCCGTGTCAGGACTGCAGCGATTCAGAAACAAGCACAGCC
TCCCCACTGAACTCTCCTCCTGCTAATCTGTATAATCAGCTAATTTAACAGTACTGTAAT
CAGACTGCCTGTGACTACAGTAAAAGCCCACTAATTCAGACCTTAGAGAAAACCCACAAC
TCCAGATCATTCGTGGAATCTGCTATTCTCGCTCGGCGGAAGTCTTTGAAATATTCTTCC
CGTTAGTCAGTGTTCAGGGTCCTATGTGTAAGAGGGGACCGAGTTTAAAAGGAGTACCTT
TTGCAAATAAAAGGCTCAAGACATTAAGAATCCCCTCACCGTGCCTTCAGCTTTGGGGTT
GAGCAGTTGTCGTTTGTTCCTTCTCCGCTGTGGGGATGTTGGCTCTGGCAGCTTTCCATT
CTCCTCCCTTCTTTGCTCTATGAATACAATAGTTTGTGAACTAAACTGCAATTTACAGTA
ATACAACTGTGTCTCTTGCTAACTAGTCTGCAAAGCAGATGTTTTCGCTATCAGACTGGC
CGCTCCCATCAT

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-218, gnl|bosTau2|chrX (9480152-9479948)
               

               
               1-218, gnl|canFam2|chrX (122704316-122704675)
               

               
               1-218, gnl|dasNov1|scaffold_45970 (5311-5668)
               

               
               1-218, gnl|echTel1|scaffold_319499 (42513-42204)
               

               
               1-218, gnl|hg17|chrX (150543679-150544046)
               

               
               1-218, gnl|Hg17|chrX (150543692-150543919)
               

               
               1-218, gnl|loxAfr1|scaffold_1523 (125912-125575)
               

               
               1-218, gnl|mm7|chrX (67358143-67358453)
               

               
               1-218, gnl|Mm7|chrX (67358153-67358333)
               

               
               1-218, gnl|monDom2|scaffold_84 (4571604-4571941)
               

               
               1-218, gnl|panTro1|chrX (155806477-155806844)
               

               
               1-218, gnl|rheMac2|chrX (149782370-149782738)
               

               
               1-218, gnl|rn3|chrX (157669380-157669069)
               


               
               238-612, gnl|bosTau2|chrX (9479886-9479506)
               

               
               238-612, gnl|Hg17|chrX (150543953-150544342)
               

               
               238-612, gnl|Mm7|chrX (67358366-67358755)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chrX (9480152-9479948)
               

               
               1-218, gnl|canFam2|chrX (122704316-122704675)
               

               
               1-218, gnl|dasNov1|scaffold_45970 (5311-5668)
               

               
               1-218, gnl|echTel1|scaffold_319499 (42513-42204)
               

               
               1-218, gnl|hg17|chrX (150543679-150544046)
               

               
               1-218, gnl|Hg17|chrX (150543692-150543919)
               

               
               1-218, gnl|loxAfr1|scaffold_1523 (125912-125575)
               

               
               1-218, gnl|mm7|chrX (67358143-67358453)
               

               
               1-218, gnl|Mm7|chrX (67358153-67358333)
               

               
               1-218, gnl|monDom2|scaffold_84 (4571604-4571941)
               

               
               1-218, gnl|panTro1|chrX (155806477-155806844)
               

               
               1-218, gnl|rheMac2|chrX (149782370-149782738)
               

               
               1-218, gnl|rn3|chrX (157669380-157669069)
               


               
               238-612, gnl|bosTau2|chrX (9479886-9479506)
               

               
               238-612, gnl|Hg17|chrX (150543953-150544342)
               

               
               238-612, gnl|Mm7|chrX (67358366-67358755)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               eep (0.122564)

	1-218, gnl\|bosTau2\|chrX (9480152-9479948)
	1-218, gnl\|canFam2\|chrX (122704316-122704675)
	1-218, gnl\|dasNov1\|scaffold_45970 (5311-5668)
	1-218, gnl\|echTel1\|scaffold_319499 (42513-42204)
	1-218, gnl\|hg17\|chrX (150543679-150544046)
	1-218, gnl\|Hg17\|chrX (150543692-150543919)
	1-218, gnl\|loxAfr1\|scaffold_1523 (125912-125575)
	1-218, gnl\|mm7\|chrX (67358143-67358453)
	1-218, gnl\|Mm7\|chrX (67358153-67358333)
	1-218, gnl\|monDom2\|scaffold_84 (4571604-4571941)
	1-218, gnl\|panTro1\|chrX (155806477-155806844)
	1-218, gnl\|rheMac2\|chrX (149782370-149782738)
	1-218, gnl\|rn3\|chrX (157669380-157669069)

	238-612, gnl\|bosTau2\|chrX (9479886-9479506)
	238-612, gnl\|Hg17\|chrX (150543953-150544342)
	238-612, gnl\|Mm7\|chrX (67358366-67358755)