Non-Coding RNA Search

Ss1.1-rece18c_a23.5

Sequence:


               
               CAGCCCTTCAGATCGGGGACAGCCTGAACACCGAGAAGGCCACGCTGATCGTCGTGCACA
CGGACGGCAGCATCGTGGAGACGGCAGGGCTGAAGGCGCCCTNTGCCCCTCTCACCCCAG
GCCCCCAGTCCCCTCCAACTCCTCTGGCTCCTGGCCAAGAGAAGGGTGGCACCAAGTACA
ACTGGGACCCGTCGGTGTATGACAGCGAGCTGCCCGTGCGCTGCCGAAACATCAGTGGCA
CCTTGTACAAGAGCAGGCTCGGCTCAGGAGGCCGGGGCCGCTGCATCAAGCAGGGTGAGA
ACTGGTACAGCCCCACGGAGTTTGAGGCCATGGCCGGGAGGGCCAGCAGCAAAGACTGGA
AGAGAAGCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCCTTCAGATCGGGGACAGCCTGAACACCGAGAAGGCCACGCTGATCGTCGTGCACA
CGGACGGCAGCATCGTGGAGACGGCAGGGCTGAAGGCGCCCTNTGCCCCTCTCACCCCAG
GCCCCCAGTCCCCTCCAACTCCTCTGGCTCCTGGCCAAGAGAAGGGTGGCACCAAGTACA
ACTGGGACCCGTCGGTGTATGACAGCGAGCTGCCCGTGCGCTGCCGAAACATCAGTGGCA
CCTTGTACAAGAGCAGGCTCGGCTCAGGAGGCCGGGGCCGCTGCATCAAGCAGGGTGAGA
ACTGGTACAGCCCCACGGAGTTTGAGGCCATGGCCGGGAGGGCCAGCAGCAAAGACTGGA
AGAGAAGCATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50797196|ref|XP_428256.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50797196|ref|XP_428256.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               119-280, gnl|bosTau2|chr29 (44726528-44726367)
               

               
               119-280, gnl|canFam2|chr18 (28741758-28741929)
               

               
               119-280, gnl|danRer3|chrUn (25930163-25930001)
               

               
               119-280, gnl|dasNov1|scaffold_55046 (5803-5627)
               

               
               119-280, gnl|echTel1|scaffold_43692 (1963-2135)
               

               
               119-280, gnl|fr1|chrUn (157365915-157365737)
               

               
               119-280, gnl|galGal2|chr5 (2919298-2919470)
               

               
               119-280, gnl|hg17|chr11 (677906-678078)
               

               
               119-280, gnl|Hg17|chr11 (678059-677906)
               

               
               119-280, gnl|loxAfr1|scaffold_146864 (781-609)
               

               
               119-280, gnl|mm7|chr7 (137739720-137739891)
               

               
               119-280, gnl|Mm7|chr7 (137739872-137739732)
               

               
               119-280, gnl|panTro1|chr9 (749773-749945)
               

               
               119-280, gnl|rheMac2|chr14 (498887-499059)
               

               
               119-280, gnl|rn3|chr1 (201673873-201674044)
               

               
               119-280, gnl|tetNig1|chr13 (10805460-10805289)
               

               
               119-280, gnl|xenTro1|scaffold_251 (1132056-1132230)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-280, gnl|bosTau2|chr29 (44726528-44726367)
               

               
               119-280, gnl|canFam2|chr18 (28741758-28741929)
               

               
               119-280, gnl|danRer3|chrUn (25930163-25930001)
               

               
               119-280, gnl|dasNov1|scaffold_55046 (5803-5627)
               

               
               119-280, gnl|echTel1|scaffold_43692 (1963-2135)
               

               
               119-280, gnl|fr1|chrUn (157365915-157365737)
               

               
               119-280, gnl|galGal2|chr5 (2919298-2919470)
               

               
               119-280, gnl|hg17|chr11 (677906-678078)
               

               
               119-280, gnl|Hg17|chr11 (678059-677906)
               

               
               119-280, gnl|loxAfr1|scaffold_146864 (781-609)
               

               
               119-280, gnl|mm7|chr7 (137739720-137739891)
               

               
               119-280, gnl|Mm7|chr7 (137739872-137739732)
               

               
               119-280, gnl|panTro1|chr9 (749773-749945)
               

               
               119-280, gnl|rheMac2|chr14 (498887-499059)
               

               
               119-280, gnl|rn3|chr1 (201673873-201674044)
               

               
               119-280, gnl|tetNig1|chr13 (10805460-10805289)
               

               
               119-280, gnl|xenTro1|scaffold_251 (1132056-1132230)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.45861)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)

	119-280, gnl\|bosTau2\|chr29 (44726528-44726367)
	119-280, gnl\|canFam2\|chr18 (28741758-28741929)
	119-280, gnl\|danRer3\|chrUn (25930163-25930001)
	119-280, gnl\|dasNov1\|scaffold_55046 (5803-5627)
	119-280, gnl\|echTel1\|scaffold_43692 (1963-2135)
	119-280, gnl\|fr1\|chrUn (157365915-157365737)
	119-280, gnl\|galGal2\|chr5 (2919298-2919470)
	119-280, gnl\|hg17\|chr11 (677906-678078)
	119-280, gnl\|Hg17\|chr11 (678059-677906)
	119-280, gnl\|loxAfr1\|scaffold_146864 (781-609)
	119-280, gnl\|mm7\|chr7 (137739720-137739891)
	119-280, gnl\|Mm7\|chr7 (137739872-137739732)
	119-280, gnl\|panTro1\|chr9 (749773-749945)
	119-280, gnl\|rheMac2\|chr14 (498887-499059)
	119-280, gnl\|rn3\|chr1 (201673873-201674044)
	119-280, gnl\|tetNig1\|chr13 (10805460-10805289)
	119-280, gnl\|xenTro1\|scaffold_251 (1132056-1132230)