Non-Coding RNA Search

Ss1.1-rece18c_b15.5

Sequence:


               
               GTTGAAAGATTTCTTTGTCTGATGTTAGTAATGCACATGTGTAACAGGCCCCCTCCAAGC
TCAAGCCAGTCATCCCCGGTATATCTCAGCAGCACTGAGTCATCCCAGTGCCAGCACACG
TCCACTGTCCAAGAGTGGCTATAGGAAAAAAGAAAGTGTATCTATCCTTTTGTATTCAAA
TGAAGTTATTTTTCTTGAAATACTGTAATATGTAGATTTTTTGTATTCTTGCCAACTTGT
GTTACCAGACAATCTGTTAATGTATCTAATTCAAATCAGCAAAGACTGACATTTTATTTT
GTCCTCTTTTGTTCTGTTTTGTTTCATTGTGCAGAGGTTTCTCTGTAAGGGCAACGAACT
TGCTGGCATCAAAGAATATCAGTTTACATATATAACAAGTGTAATAAGATTCCACCAAAG
GACAGTCTAAGTGTTTTCTTGTTGCTTTAACACTGGAAGATTTAAAGAATAAAAATTCCT
GCATAAACGATTTCAGGAATTTGTATTGCAATTTCTTAAGATGAAAGGAGCAGCCACCAA
GCAGATTCACATTCACTTTACTGATTTCTATGTGGACTGAATACACTCAGCTGACGAATT
TAGTACCCAGGAAGATGGATTGATGTTCACTAGCTTGGACAACTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAAAGATTTCTTTGTCTGATGTTAGTAATGCACATGTGTAACAGGCCCCCTCCAAGC
TCAAGCCAGTCATCCCCGGTATATCTCAGCAGCACTGAGTCATCCCAGTGCCAGCACACG
TCCACTGTCCAAGAGTGGCTATAGGAAAAAAGAAAGTGTATCTATCCTTTTGTATTCAAA
TGAAGTTATTTTTCTTGAAATACTGTAATATGTAGATTTTTTGTATTCTTGCCAACTTGT
GTTACCAGACAATCTGTTAATGTATCTAATTCAAATCAGCAAAGACTGACATTTTATTTT
GTCCTCTTTTGTTCTGTTTTGTTTCATTGTGCAGAGGTTTCTCTGTAAGGGCAACGAACT
TGCTGGCATCAAAGAATATCAGTTTACATATATAACAAGTGTAATAAGATTCCACCAAAG
GACAGTCTAAGTGTTTTCTTGTTGCTTTAACACTGGAAGATTTAAAGAATAAAAATTCCT
GCATAAACGATTTCAGGAATTTGTATTGCAATTTCTTAAGATGAAAGGAGCAGCCACCAA
GCAGATTCACATTCACTTTACTGATTTCTATGTGGACTGAATACACTCAGCTGACGAATT
TAGTACCCAGGAAGATGGATTGATGTTCACTAGCTTGGACAACTTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-348, + strand, RNAz p=0.719188

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-348, + strand, RNAz p=0.719188

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014917, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014917, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr3 (33605423-33606074)
               

               
               1-648, gnl|Hg17|chr1 (107736032-107736677)
               

               
               1-648, gnl|Mm7|chr3 (109600433-109599780)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr3 (33605423-33606074)
               

               
               1-648, gnl|Hg17|chr1 (107736032-107736677)
               

               
               1-648, gnl|Mm7|chr3 (109600433-109599780)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               hyp (0.142837)

	1-648, gnl\|bosTau2\|chr3 (33605423-33606074)
	1-648, gnl\|Hg17\|chr1 (107736032-107736677)
	1-648, gnl\|Mm7\|chr3 (109600433-109599780)