Ss1.1-rece18c_e17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCAGGGTCGAGAGCTACCGGAGAACGGATCCACCTGAGGACCTCGGGTCGTTGCGGG CAAGACACTTAACCTCTCCGGATGTAAATTCCCCCCGTGAATAAAGTTGATGTTGCTGGA AGAGGTGAAGGAATTGGACTAGATGATACCAGAGTGTTTCCTGGTCTGTGGCTGAAAACG CACCTTTAGCTTGAGCCAAGGACACTACAGATGGCCCAAGTGATTATGTTCTCAAAATAA GCAACACCGAGTCCAGCAAAAATCCAGACCTGATTGAAGTGCAGAGTCACATCATCATGT TTCTGAGAGCGGCTGGATTTCCAACAGCCTCTGTGTGTCGCACTAAAGGAGACAACATAA CCTCTCTCGTGTCTGTAGATAGCGGCTCTGAAGTCAAAACCTACTTGGTGAGGCTGCTGA CTTACCTGCCGGGAAGACCCATAGCTGAGATACCCATCAGCCCTCAGCTATTATATGAAA TTGGAAAGCTAGCCGCCAAATTGGATAAAACACTGGAGAAGTTCCATCACCCAAAGTTAA GTTGTCTTCATCGGGAGAACTTCCTTTGGAACCTGAAAAGTGTTCCTCTTCTGGAGAAAC ACCTGCCTGCCTTGGGCCAGAATCGGAATCGCGAGATTGTCAGACAGGTCATTCAGCTGT TCAAGGATGAAGTCATGACCAAATTAAGTCATTTTCGAGAATGTATCAATCATGGAGATC TCAATGACCATAATATTTTAATTGAGTCCAGCAAGCCAGCCTTTGGAGATGCTGTGTATC AAGTGTCTGGGATTTTAGATTTTGATGACATGAGCTATGGCTACTATGTATTTGAAGTGG CAATCACCATCATGTACATGATGATTGAAAGCAAGACTCCTATACAAGTAGGAGGTCATG TCCTTGCAGGGTTTGAAAGTATAATCCCACTGACACCTGTGGAGAGGGGTGCTTTGTTTC TACTTGTATGTGGTCGTTTTTGTCAGTCCCTTGTCATAGCTGCATATTCTTGTCAGCTAT ACCCAGAGAATGAAGAATATCTCATGATTACTGCAAAAACCGGGTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCAGGGTCGAGAGCTACCGGAGAACGGATCCACCTGAGGACCTCGGGTCGTTGCGGG CAAGACACTTAACCTCTCCGGATGTAAATTCCCCCCGTGAATAAAGTTGATGTTGCTGGA AGAGGTGAAGGAATTGGACTAGATGATACCAGAGTGTTTCCTGGTCTGTGGCTGAAAACG CACCTTTAGCTTGAGCCAAGGACACTACAGATGGCCCAAGTGATTATGTTCTCAAAATAA GCAACACCGAGTCCAGCAAAAATCCAGACCTGATTGAAGTGCAGAGTCACATCATCATGT TTCTGAGAGCGGCTGGATTTCCAACAGCCTCTGTGTGTCGCACTAAAGGAGACAACATAA CCTCTCTCGTGTCTGTAGATAGCGGCTCTGAAGTCAAAACCTACTTGGTGAGGCTGCTGA CTTACCTGCCGGGAAGACCCATAGCTGAGATACCCATCAGCCCTCAGCTATTATATGAAA TTGGAAAGCTAGCCGCCAAATTGGATAAAACACTGGAGAAGTTCCATCACCCAAAGTTAA GTTGTCTTCATCGGGAGAACTTCCTTTGGAACCTGAAAAGTGTTCCTCTTCTGGAGAAAC ACCTGCCTGCCTTGGGCCAGAATCGGAATCGCGAGATTGTCAGACAGGTCATTCAGCTGT TCAAGGATGAAGTCATGACCAAATTAAGTCATTTTCGAGAATGTATCAATCATGGAGATC TCAATGACCATAATATTTTAATTGAGTCCAGCAAGCCAGCCTTTGGAGATGCTGTGTATC AAGTGTCTGGGATTTTAGATTTTGATGACATGAGCTATGGCTACTATGTATTTGAAGTGG CAATCACCATCATGTACATGATGATTGAAAGCAAGACTCCTATACAAGTAGGAGGTCATG TCCTTGCAGGGTTTGAAAGTATAATCCCACTGACACCTGTGGAGAGGGGTGCTTTGTTTC TACTTGTATGTGGTCGTTTTTGTCAGTCCCTTGTCATAGCTGCATATTCTTGTCAGCTAT ACCCAGAGAATGAAGAATATCTCATGATTACTGCAAAAACCGGGTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 232-381, - strand, RNAz p=0.751962 | |
| 782-901, + strand, RNAz p=0.839088 | |
| 792-908, - strand, RNAz p=0.668623 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 232-381, - strand, RNAz p=0.751962 | |
| 782-901, + strand, RNAz p=0.839088 | |
| 792-908, - strand, RNAz p=0.668623 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 193-381, gnl|bosTau2|chr21 (20369186-20368998) | |
| 193-381, gnl|canFam2|chr13 (41438877-41438622) | |
| 193-381, gnl|danRer3|chr21 (31896703-31896917) | |
| 193-381, gnl|dasNov1|scaffold_303176 (447-192) | |
| 193-381, gnl|echTel1|scaffold_287624 (4966-4705) | |
| 193-381, gnl|fr1|chrUn (23509054-23509284) | |
| 193-381, gnl|galGal2|chr10 (4446909-4446657) | |
| 193-381, gnl|hg17|chr15 (76592525-76592771) | |
| 193-381, gnl|Hg17|chr15 (76592646-76592825) | |
| 193-381, gnl|loxAfr1|scaffold_33553 (15258-15512) | |
| 193-381, gnl|mm7|chr9 (54949823-54950078) | |
| 193-381, gnl|Mm7|chr9 (54949944-54950132) | |
| 193-381, gnl|monDom2|scaffold_41 (16990918-16991173) | |
| 193-381, gnl|panTro1|chr16 (77251613-77251859) | |
| 193-381, gnl|rheMac2|chr7 (57548473-57548719) | |
| 193-381, gnl|rn3|chr8 (58506150-58506405) | |
| 193-381, gnl|tetNig1|chr1_random (2758743-2758550) | |
| 703-1068, gnl|bosTau2|chr21 (20337581-20337216) | |
| 703-1068, gnl|canFam2|chr13 (41427260-41426757) | |
| 703-1068, gnl|danRer3|chr21 (31900953-31901399) | |
| 703-1068, gnl|dasNov1|scaffold_68061 (3828-4347) | |
| 703-1068, gnl|echTel1|scaffold_242480 (2018-2524) | |
| 703-1068, gnl|fr1|chrUn (23509946-23510377) | |
| 703-1068, gnl|galGal2|chr10 (4442715-4442252) | |
| 703-1068, gnl|hg17|chr15 (76612570-76613075) | |
| 703-1068, gnl|Hg17|chr15 (76612607-76612972) | |
| 703-1068, gnl|loxAfr1|scaffold_6267 (58676-59173) | |
| 703-1068, gnl|mm7|chr9 (54976167-54976666) | |
| 703-1068, gnl|Mm7|chr9 (54976202-54976567) | |
| 703-1068, gnl|monDom2|scaffold_41 (17001000-17001462) | |
| 703-1068, gnl|oryCun1|scaffold_164614 (8995-8497) | |
| 703-1068, gnl|panTro1|chr16 (77272264-77272769) | |
| 703-1068, gnl|rheMac2|chr7 (57568337-57568842) | |
| 703-1068, gnl|rn3|chr8 (58523337-58523840) | |
| 703-1068, gnl|tetNig1|chr1_random (2757631-2757200) | |
| 703-1068, gnl|xenTro1|scaffold_295 (981350-981825) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 193-381, gnl|bosTau2|chr21 (20369186-20368998) | |
| 193-381, gnl|canFam2|chr13 (41438877-41438622) | |
| 193-381, gnl|danRer3|chr21 (31896703-31896917) | |
| 193-381, gnl|dasNov1|scaffold_303176 (447-192) | |
| 193-381, gnl|echTel1|scaffold_287624 (4966-4705) | |
| 193-381, gnl|fr1|chrUn (23509054-23509284) | |
| 193-381, gnl|galGal2|chr10 (4446909-4446657) | |
| 193-381, gnl|hg17|chr15 (76592525-76592771) | |
| 193-381, gnl|Hg17|chr15 (76592646-76592825) | |
| 193-381, gnl|loxAfr1|scaffold_33553 (15258-15512) | |
| 193-381, gnl|mm7|chr9 (54949823-54950078) | |
| 193-381, gnl|Mm7|chr9 (54949944-54950132) | |
| 193-381, gnl|monDom2|scaffold_41 (16990918-16991173) | |
| 193-381, gnl|panTro1|chr16 (77251613-77251859) | |
| 193-381, gnl|rheMac2|chr7 (57548473-57548719) | |
| 193-381, gnl|rn3|chr8 (58506150-58506405) | |
| 193-381, gnl|tetNig1|chr1_random (2758743-2758550) | |
| 703-1068, gnl|bosTau2|chr21 (20337581-20337216) | |
| 703-1068, gnl|canFam2|chr13 (41427260-41426757) | |
| 703-1068, gnl|danRer3|chr21 (31900953-31901399) | |
| 703-1068, gnl|dasNov1|scaffold_68061 (3828-4347) | |
| 703-1068, gnl|echTel1|scaffold_242480 (2018-2524) | |
| 703-1068, gnl|fr1|chrUn (23509946-23510377) | |
| 703-1068, gnl|galGal2|chr10 (4442715-4442252) | |
| 703-1068, gnl|hg17|chr15 (76612570-76613075) | |
| 703-1068, gnl|Hg17|chr15 (76612607-76612972) | |
| 703-1068, gnl|loxAfr1|scaffold_6267 (58676-59173) | |
| 703-1068, gnl|mm7|chr9 (54976167-54976666) | |
| 703-1068, gnl|Mm7|chr9 (54976202-54976567) | |
| 703-1068, gnl|monDom2|scaffold_41 (17001000-17001462) | |
| 703-1068, gnl|oryCun1|scaffold_164614 (8995-8497) | |
| 703-1068, gnl|panTro1|chr16 (77272264-77272769) | |
| 703-1068, gnl|rheMac2|chr7 (57568337-57568842) | |
| 703-1068, gnl|rn3|chr8 (58523337-58523840) | |
| 703-1068, gnl|tetNig1|chr1_random (2757631-2757200) | |
| 703-1068, gnl|xenTro1|scaffold_295 (981350-981825) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| eye (0.170503) | |
| ski (0.146735) |