Non-Coding RNA Search

Ss1.1-rece18c_f13.5

Sequence:


               
               GGGAGGCCACAGCCCCATCCTGATCAGGCTGCCTCCAGCCCGCCATCAGCCCCACCAGAT
CTCCGTTTGTGGCCACGAGAGCCTCCACGAGACCACGCCTCCCTGCCCGCCCGCCCTAGA
CCTGTGGGAGCTCAGTGCCCTCTCTCCCCAGGTCTGAGAGCATGGGGCTCTGCCTCAGCA
CAGCCCCACGGAGGCCATGGCCTCCTCCTTCTGTCCTTGTTGTTTTGTTTTTAACAATTG
TACTTTGCACACACGAAAAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGCCACAGCCCCATCCTGATCAGGCTGCCTCCAGCCCGCCATCAGCCCCACCAGAT
CTCCGTTTGTGGCCACGAGAGCCTCCACGAGACCACGCCTCCCTGCCCGCCCGCCCTAGA
CCTGTGGGAGCTCAGTGCCCTCTCTCCCCAGGTCTGAGAGCATGGGGCTCTGCCTCAGCA
CAGCCCCACGGAGGCCATGGCCTCCTCCTTCTGTCCTTGTTGTTTTGTTTTTAACAATTG
TACTTTGCACACACGAAAAAAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-258, - strand, RNAz p=0.99999

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-258, - strand, RNAz p=0.99999

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               100-252, 153451 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE665277.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               100-252, 153457 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE665280.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               100-252, 226739 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF076961.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               100-252, 270472 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF604578.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               100-252, 967557 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK776406.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               99-253, DG8-210p22 DG8-testis Canis familiaris cDNA 3', mRNA sequence 
(gb|CO600902.1|), blast E-value=9e-22, identity=84.62%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               100-252, 153451 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE665277.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               100-252, 153457 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE665280.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               100-252, 226739 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF076961.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               100-252, 270472 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF604578.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               100-252, 967557 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK776406.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               99-253, DG8-210p22 DG8-testis Canis familiaris cDNA 3', mRNA sequence 
(gb|CO600902.1|), blast E-value=9e-22, identity=84.62%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-258, gnl|bosTau2|chrX (25778456-25778712)
               

               
               3-258, gnl|Hg17|chrX (48175597-48175857)
               

               
               3-258, gnl|Mm7|chrX (6587875-6587632)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-258, gnl|bosTau2|chrX (25778456-25778712)
               

               
               3-258, gnl|Hg17|chrX (48175597-48175857)
               

               
               3-258, gnl|Mm7|chrX (6587875-6587632)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)

	100-252, 153451 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE665277.1\|), blast E-value=2e-22, identity=84.97%
	100-252, 153457 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE665280.1\|), blast E-value=2e-22, identity=84.97%
	100-252, 226739 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF076961.1\|), blast E-value=2e-22, identity=84.97%
	100-252, 270472 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF604578.1\|), blast E-value=2e-22, identity=84.97%
	100-252, 967557 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK776406.1\|), blast E-value=2e-22, identity=84.97%
	99-253, DG8-210p22 DG8-testis Canis familiaris cDNA 3', mRNA sequence (gb\|CO600902.1\|), blast E-value=9e-22, identity=84.62%

	3-258, gnl\|bosTau2\|chrX (25778456-25778712)
	3-258, gnl\|Hg17\|chrX (48175597-48175857)
	3-258, gnl\|Mm7\|chrX (6587875-6587632)