Ss1.1-rece19c_j11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTGGTGCTCCAGAATGTGGCGACCATGTCCATCAAGCGTCGGGGTATGTTTGAGCCGTA CCTGAAGAGCTTCTACATCAGGTCCACTGACCCCACCCAGATCAAGATCTTGAAGCTGGA AGTGTTGACTAACCTGGCCAATGAGACCAACATCCCCACTGTCCTACGGGAATTCCAGAC CTACATTCGCAGCATGGACAAGGACTTTGTGGCGGCCACAATCCAGGCCATTGGGCGCTG TGCAACGAACATAGGCCGGGTCCGTGACACCTGCCTCAACGGCCTAGTGCAGCTGCTGTC CAACCGTGATGAGCTTGTGGTCGCAGAGTCAGTGGTCGTCATTAAGAAGCTGCTGCAGAT GCAGCCGGCACAACACGGAGAGATCATCAAACACTAGGCAAAACTCACAGACAACATCCA GGTACCCATGGCCCGAGCCAGCATCCTGTGGCTCATTGGCGAGTACTGTGAGCACGTCCC CAGGATTGCACCTGATGTCCTGAGAAAAATGGCCAAGTCCTTCACAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTGGTGCTCCAGAATGTGGCGACCATGTCCATCAAGCGTCGGGGTATGTTTGAGCCGTA CCTGAAGAGCTTCTACATCAGGTCCACTGACCCCACCCAGATCAAGATCTTGAAGCTGGA AGTGTTGACTAACCTGGCCAATGAGACCAACATCCCCACTGTCCTACGGGAATTCCAGAC CTACATTCGCAGCATGGACAAGGACTTTGTGGCGGCCACAATCCAGGCCATTGGGCGCTG TGCAACGAACATAGGCCGGGTCCGTGACACCTGCCTCAACGGCCTAGTGCAGCTGCTGTC CAACCGTGATGAGCTTGTGGTCGCAGAGTCAGTGGTCGTCATTAAGAAGCTGCTGCAGAT GCAGCCGGCACAACACGGAGAGATCATCAAACACTAGGCAAAACTCACAGACAACATCCA GGTACCCATGGCCCGAGCCAGCATCCTGTGGCTCATTGGCGAGTACTGTGAGCACGTCCC CAGGATTGCACCTGATGTCCTGAGAAAAATGGCCAAGTCCTTCACAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 176-311, - strand, RNAz p=0.997757 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 176-311, - strand, RNAz p=0.997757 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 176-311, gnl|bosTau2|chr21 (13351835-13351700) | |
| 176-311, gnl|canFam2|chr3 (57387385-57387556) | |
| 176-311, gnl|danRer3|chr25 (4763475-4763628) | |
| 176-311, gnl|dasNov1|scaffold_68863 (464-316) | |
| 176-311, gnl|echTel1|scaffold_314067 (131876-132039) | |
| 176-311, gnl|fr1|chrUn (257273818-257273666) | |
| 176-311, gnl|galGal2|chr10 (1303300-1303148) | |
| 176-311, gnl|hg17|chr15 (81143464-81143632) | |
| 176-311, gnl|Hg17|chr15 (81143613-81143478) | |
| 176-311, gnl|loxAfr1|scaffold_54828 (5018-5175) | |
| 176-311, gnl|mm7|chr7 (77346665-77346836) | |
| 176-311, gnl|Mm7|chr7 (77346814-77346679) | |
| 176-311, gnl|monDom2|scaffold_14 (17579047-17578879) | |
| 176-311, gnl|oryCun1|scaffold_140561 (569-398) | |
| 176-311, gnl|panTro1|chr16 (81929103-81929271) | |
| 176-311, gnl|rheMac2|chr7 (63859071-63858903) | |
| 176-311, gnl|rn3|chr1 (137763483-137763653) | |
| 176-311, gnl|tetNig1|chr13 (7994991-7994846) | |
| 176-311, gnl|xenTro1|scaffold_295 (515878-516030) | |
| 419-528, gnl|bosTau2|chr21 (13350183-13350074) | |
| 419-528, gnl|canFam2|chr3 (57386189-57386388) | |
| 419-528, gnl|danRer3|chr25 (4760522-4760719) | |
| 419-528, gnl|dasNov1|scaffold_55624 (9873-9674) | |
| 419-528, gnl|echTel1|scaffold_314067 (130676-130875) | |
| 419-528, gnl|fr1|chrUn (257274761-257274561) | |
| 419-528, gnl|galGal2|chr10 (1303760-1303562) | |
| 419-528, gnl|hg17|chr15 (81142249-81142448) | |
| 419-528, gnl|Hg17|chr15 (81142447-81142338) | |
| 419-528, gnl|loxAfr1|scaffold_54828 (3799-3998) | |
| 419-528, gnl|mm7|chr7 (77345095-77345294) | |
| 419-528, gnl|Mm7|chr7 (77345293-77345184) | |
| 419-528, gnl|monDom2|scaffold_14 (17579972-17579790) | |
| 419-528, gnl|oryCun1|scaffold_201281 (162287-162469) | |
| 419-528, gnl|panTro1|chr16 (81927888-81928087) | |
| 419-528, gnl|rheMac2|chr7 (63860283-63860084) | |
| 419-528, gnl|rn3|chr1 (137761811-137762010) | |
| 419-528, gnl|tetNig1|chr13 (7995578-7995389) | |
| 419-528, gnl|xenTro1|scaffold_295 (514708-514897) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-311, gnl|bosTau2|chr21 (13351835-13351700) | |
| 176-311, gnl|canFam2|chr3 (57387385-57387556) | |
| 176-311, gnl|danRer3|chr25 (4763475-4763628) | |
| 176-311, gnl|dasNov1|scaffold_68863 (464-316) | |
| 176-311, gnl|echTel1|scaffold_314067 (131876-132039) | |
| 176-311, gnl|fr1|chrUn (257273818-257273666) | |
| 176-311, gnl|galGal2|chr10 (1303300-1303148) | |
| 176-311, gnl|hg17|chr15 (81143464-81143632) | |
| 176-311, gnl|Hg17|chr15 (81143613-81143478) | |
| 176-311, gnl|loxAfr1|scaffold_54828 (5018-5175) | |
| 176-311, gnl|mm7|chr7 (77346665-77346836) | |
| 176-311, gnl|Mm7|chr7 (77346814-77346679) | |
| 176-311, gnl|monDom2|scaffold_14 (17579047-17578879) | |
| 176-311, gnl|oryCun1|scaffold_140561 (569-398) | |
| 176-311, gnl|panTro1|chr16 (81929103-81929271) | |
| 176-311, gnl|rheMac2|chr7 (63859071-63858903) | |
| 176-311, gnl|rn3|chr1 (137763483-137763653) | |
| 176-311, gnl|tetNig1|chr13 (7994991-7994846) | |
| 176-311, gnl|xenTro1|scaffold_295 (515878-516030) | |
| 419-528, gnl|bosTau2|chr21 (13350183-13350074) | |
| 419-528, gnl|canFam2|chr3 (57386189-57386388) | |
| 419-528, gnl|danRer3|chr25 (4760522-4760719) | |
| 419-528, gnl|dasNov1|scaffold_55624 (9873-9674) | |
| 419-528, gnl|echTel1|scaffold_314067 (130676-130875) | |
| 419-528, gnl|fr1|chrUn (257274761-257274561) | |
| 419-528, gnl|galGal2|chr10 (1303760-1303562) | |
| 419-528, gnl|hg17|chr15 (81142249-81142448) | |
| 419-528, gnl|Hg17|chr15 (81142447-81142338) | |
| 419-528, gnl|loxAfr1|scaffold_54828 (3799-3998) | |
| 419-528, gnl|mm7|chr7 (77345095-77345294) | |
| 419-528, gnl|Mm7|chr7 (77345293-77345184) | |
| 419-528, gnl|monDom2|scaffold_14 (17579972-17579790) | |
| 419-528, gnl|oryCun1|scaffold_201281 (162287-162469) | |
| 419-528, gnl|panTro1|chr16 (81927888-81928087) | |
| 419-528, gnl|rheMac2|chr7 (63860283-63860084) | |
| 419-528, gnl|rn3|chr1 (137761811-137762010) | |
| 419-528, gnl|tetNig1|chr13 (7995578-7995389) | |
| 419-528, gnl|xenTro1|scaffold_295 (514708-514897) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) |