Non-Coding RNA Search

Ss1.1-rece21c_c9.5

Sequence:


               
               CCTCAAGCACCAGAAGATCCACGCCGGCGAGAAGCCGTACCGCTGCACCGAGTGCGGCAA
GAGCTTCATCCAGAGCTCCGAGCTGACCCAGCACCAGCGCACGCACACCGGCGAGAAGCC
CTACGAGTGCCTCGAGTGCGGCAAGAGCTTCGGCCACAGCTCCACCCTCATCAAGCACCA
GCGGACTCACCTACGCGAGGACCCCTTCAAGTGCCCGGTGTGCGGCAAGACCTTCACGCT
GAGCGCCACGCTGCTGCGGCACCAGCGCACGCACACGGGCGAGCGGCCCTACAAGTGCCC
CGAGTGCGGCAAGAGCTTCAGCGTCAGCTCCAACCTCATCAACCACCAGCGCATCCACCG
CGGCGAGCGGCCCTACATCTGCGCCGACTGCGGCAAGAGCTTCATCATGAGCTCCACCCT
CATCCGCCACCAGCGCATCCACACGGGTGAGAAGCCCTACAAGTGCTCCGACTGCGGCAA
GAGCTTCATCCGCAGCTCCCACCTCATCCAGCACCGCCGCACGCACACGGGCGAGAAGCC
CTACAAGTGCCCCGAGTGCGGCAAGAGCTTCAGCCAGAGCTCCAACCTCATCACGCACGT
GCGCACCCACATGGACGAGAACCTCTTCGTGTGCTCCGACTGCGGCAAGGCCTTCTTGGA
GGCGCACGAGCTGGAGCAGCATCGGGTGATCCACGAAAGGGGCAAGACCCCGGCCCGAAG
AGCTCAGGGTGACAGTCTGCTGGGGCTCGGGGACCCTGCCCTGCTGACCCCACCCCCCGG
AGCCAAGCCACACAAGTGTCTCGTCTGGGAAAGGGGTTCAACGACGAGGGCATCTTCATG
CAGCATCAGAGGATCCATATGGAGAAAACCCCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCAAGCACCAGAAGATCCACGCCGGCGAGAAGCCGTACCGCTGCACCGAGTGCGGCAA
GAGCTTCATCCAGAGCTCCGAGCTGACCCAGCACCAGCGCACGCACACCGGCGAGAAGCC
CTACGAGTGCCTCGAGTGCGGCAAGAGCTTCGGCCACAGCTCCACCCTCATCAAGCACCA
GCGGACTCACCTACGCGAGGACCCCTTCAAGTGCCCGGTGTGCGGCAAGACCTTCACGCT
GAGCGCCACGCTGCTGCGGCACCAGCGCACGCACACGGGCGAGCGGCCCTACAAGTGCCC
CGAGTGCGGCAAGAGCTTCAGCGTCAGCTCCAACCTCATCAACCACCAGCGCATCCACCG
CGGCGAGCGGCCCTACATCTGCGCCGACTGCGGCAAGAGCTTCATCATGAGCTCCACCCT
CATCCGCCACCAGCGCATCCACACGGGTGAGAAGCCCTACAAGTGCTCCGACTGCGGCAA
GAGCTTCATCCGCAGCTCCCACCTCATCCAGCACCGCCGCACGCACACGGGCGAGAAGCC
CTACAAGTGCCCCGAGTGCGGCAAGAGCTTCAGCCAGAGCTCCAACCTCATCACGCACGT
GCGCACCCACATGGACGAGAACCTCTTCGTGTGCTCCGACTGCGGCAAGGCCTTCTTGGA
GGCGCACGAGCTGGAGCAGCATCGGGTGATCCACGAAAGGGGCAAGACCCCGGCCCGAAG
AGCTCAGGGTGACAGTCTGCTGGGGCTCGGGGACCCTGCCCTGCTGACCCCACCCCCCGG
AGCCAAGCCACACAAGTGTCTCGTCTGGGAAAGGGGTTCAACGACGAGGGCATCTTCATG
CAGCATCAGAGGATCCATATGGAGAAAACCCCTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               163-282, - strand, RNAz p=0.747376

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-282, - strand, RNAz p=0.747376

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-874, gnl|bosTau2|chr14 (680365-681243)
               

               
               1-874, gnl|Hg17|chr8 (144803767-144804645)
               

               
               1-874, gnl|Mm7|chr11 (70853327-70854063)
               


               
               3-709, gnl|bosTau2|chr14 (3080450-3079744)
               

               
               3-709, gnl|Hg17|chr8 (146127715-146127009)
               


               
               5-655, gnl|bosTau2|chr10 (8996870-8996220)
               

               
               5-655, gnl|Hg17|chr19 (42818675-42817941)
               

               
               5-655, gnl|Mm7|chr2 (127310301-127309672)
               


               
               7-582, gnl|bosTau2|chr10 (8996616-8996041)
               

               
               7-582, gnl|Hg17|chr19 (42818421-42817762)
               

               
               7-582, gnl|Mm7|chr2 (127310047-127309556)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-874, gnl|bosTau2|chr14 (680365-681243)
               

               
               1-874, gnl|Hg17|chr8 (144803767-144804645)
               

               
               1-874, gnl|Mm7|chr11 (70853327-70854063)
               


               
               3-709, gnl|bosTau2|chr14 (3080450-3079744)
               

               
               3-709, gnl|Hg17|chr8 (146127715-146127009)
               


               
               5-655, gnl|bosTau2|chr10 (8996870-8996220)
               

               
               5-655, gnl|Hg17|chr19 (42818675-42817941)
               

               
               5-655, gnl|Mm7|chr2 (127310301-127309672)
               


               
               7-582, gnl|bosTau2|chr10 (8996616-8996041)
               

               
               7-582, gnl|Hg17|chr19 (42818421-42817762)
               

               
               7-582, gnl|Mm7|chr2 (127310047-127309556)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-874, gnl\|bosTau2\|chr14 (680365-681243)
	1-874, gnl\|Hg17\|chr8 (144803767-144804645)
	1-874, gnl\|Mm7\|chr11 (70853327-70854063)

	3-709, gnl\|bosTau2\|chr14 (3080450-3079744)
	3-709, gnl\|Hg17\|chr8 (146127715-146127009)

	5-655, gnl\|bosTau2\|chr10 (8996870-8996220)
	5-655, gnl\|Hg17\|chr19 (42818675-42817941)
	5-655, gnl\|Mm7\|chr2 (127310301-127309672)

	7-582, gnl\|bosTau2\|chr10 (8996616-8996041)
	7-582, gnl\|Hg17\|chr19 (42818421-42817762)
	7-582, gnl\|Mm7\|chr2 (127310047-127309556)