Non-Coding RNA Search

Ss1.1-rece22c_b22.5

Sequence:


               
               GGATGGAGCTCCCTCCTCCCTTTCCGGGGTGCTTGTGGGGTGGGTATGCCCATGCCCACG
GGGCTGTAACCTCTCAGTGTCCAGCCGGATCCACCCCAGGCCAGTAACCCACCCTGTGTT
TTCCTGCACCCCCTTTCCCCATTTCAGTTCAACCAGGCCACCCTCTCCTGTTTCCTGTTT
GTTGATGATGACCCAGAATTACAGCATTTTCTGTCTCCCACCCCGCCCCTTTACTGCTGG
CCTCCCCTCTCCAGGCGGGAGACAGGTTCAGCTAAAGCTATAGCACCGGGTGTGGTATAG
AAGCCGTGAGTCCCGGGGAGCCTCTGGGCCACCAAGAGATACGTGCTCGCTCTTCCTCTT
TCTCTGTCCAGTGGGGGGTGGCTCCTCTGACTTGAGGGGCTACCCTGGGAAGCTGCTAAC
GCTTCAGCCAAGCAGGAGAGCTTCCTTCAACTTCCACAACCAGTGGGTGAAGGGATTCCC
ACCTCCCATAACCCCCACCCAAGTTCCCAAGGCCCCAGTTTCAAGCACCAGACAGCAAGA
AGCCTTAGCAGCTGGCCGGGTTCCAGATCAGTGGGTAGGGATAGGGAGACGAAGCATACA
CAGTAAATAAAAGGTTTTTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGAGCTCCCTCCTCCCTTTCCGGGGTGCTTGTGGGGTGGGTATGCCCATGCCCACG
GGGCTGTAACCTCTCAGTGTCCAGCCGGATCCACCCCAGGCCAGTAACCCACCCTGTGTT
TTCCTGCACCCCCTTTCCCCATTTCAGTTCAACCAGGCCACCCTCTCCTGTTTCCTGTTT
GTTGATGATGACCCAGAATTACAGCATTTTCTGTCTCCCACCCCGCCCCTTTACTGCTGG
CCTCCCCTCTCCAGGCGGGAGACAGGTTCAGCTAAAGCTATAGCACCGGGTGTGGTATAG
AAGCCGTGAGTCCCGGGGAGCCTCTGGGCCACCAAGAGATACGTGCTCGCTCTTCCTCTT
TCTCTGTCCAGTGGGGGGTGGCTCCTCTGACTTGAGGGGCTACCCTGGGAAGCTGCTAAC
GCTTCAGCCAAGCAGGAGAGCTTCCTTCAACTTCCACAACCAGTGGGTGAAGGGATTCCC
ACCTCCCATAACCCCCACCCAAGTTCCCAAGGCCCCAGTTTCAAGCACCAGACAGCAAGA
AGCCTTAGCAGCTGGCCGGGTTCCAGATCAGTGGGTAGGGATAGGGAGACGAAGCATACA
CAGTAAATAAAAGGTTTTTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-145, - strand, RNAz p=0.861915
               

               
               331-486, + strand, RNAz p=0.998668

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-145, - strand, RNAz p=0.861915
               

               
               331-486, + strand, RNAz p=0.998668

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005631, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005631, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-625, gnl|bosTau2|chr4 (49796949-49796337)
               

               
               1-625, gnl|Hg17|chr7 (128446734-128447336)
               

               
               1-625, gnl|Mm7|chr6 (29692896-29693506)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-625, gnl|bosTau2|chr4 (49796949-49796337)
               

               
               1-625, gnl|Hg17|chr7 (128446734-128447336)
               

               
               1-625, gnl|Mm7|chr6 (29692896-29693506)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               eye (0.170503)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               eye (0.170503)

	40-145, - strand, RNAz p=0.861915
	331-486, + strand, RNAz p=0.998668

	1-625, gnl\|bosTau2\|chr4 (49796949-49796337)
	1-625, gnl\|Hg17\|chr7 (128446734-128447336)
	1-625, gnl\|Mm7\|chr6 (29692896-29693506)