Non-Coding RNA Search

Ss1.1-rece22c_f12.5

Sequence:


               
               ACCATTCGAGGAAGAGCGTGGTCCAGTCCTACAGCTAAAGCCGGGAGGTGAGTCAGTCAC
CTTGAGCCGGGCGAGCGCTGTGTTCCAAGCCGGGGCAGCGGGGCAGTGAGAGTGCAGACA
GAAAAAATGCAAACCACCGGGGCGCTACTCATTTCTCCTGCTCTGCTCCGCTCTTGTACC
AGGGGCCTGATCAGGCCTGTGTCTGCCTCCTTCCTGAGTAGGCCAGAAATCCCATCTGAA
CAGCCGCCCTGCAGCAGTGTCCCACTCCAGGTGGCCAGGCGGGAGTTCCAGACCAGTGTT
GTCTCCCGGGACATTGACACAGCGGCCAAGTTTATTGGTGCTGGGGCCGCCACAGTTGGT
GTGGCTGGTTCCGGGGCTGGCATTGGAACAGTGTTTGGCAGCTTGATCATTGGCTATGCC
AGGAACCCATCTCTGAAGCAGCAGCTCTTCTCCTATGCCATTCTGGGCTTTGCCCTGTCT
GAGGCCATGGGGCTCTTCTGTTTGATGGTCGCCTTCCTTATCCTCTTCGCCATGTGAGGC
TTCGTGGAGGTCACCTACCCGTCCCTGCTGCTTCGACTCCAAGGCCATGCCCGGTGCTGG
AGTGTGCTGAGCTTGACCATTAAACACAACGTTTCTCTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCATTCGAGGAAGAGCGTGGTCCAGTCCTACAGCTAAAGCCGGGAGGTGAGTCAGTCAC
CTTGAGCCGGGCGAGCGCTGTGTTCCAAGCCGGGGCAGCGGGGCAGTGAGAGTGCAGACA
GAAAAAATGCAAACCACCGGGGCGCTACTCATTTCTCCTGCTCTGCTCCGCTCTTGTACC
AGGGGCCTGATCAGGCCTGTGTCTGCCTCCTTCCTGAGTAGGCCAGAAATCCCATCTGAA
CAGCCGCCCTGCAGCAGTGTCCCACTCCAGGTGGCCAGGCGGGAGTTCCAGACCAGTGTT
GTCTCCCGGGACATTGACACAGCGGCCAAGTTTATTGGTGCTGGGGCCGCCACAGTTGGT
GTGGCTGGTTCCGGGGCTGGCATTGGAACAGTGTTTGGCAGCTTGATCATTGGCTATGCC
AGGAACCCATCTCTGAAGCAGCAGCTCTTCTCCTATGCCATTCTGGGCTTTGCCCTGTCT
GAGGCCATGGGGCTCTTCTGTTTGATGGTCGCCTTCCTTATCCTCTTCGCCATGTGAGGC
TTCGTGGAGGTCACCTACCCGTCCCTGCTGCTTCGACTCCAAGGCCATGCCCGGTGCTGG
AGTGTGCTGAGCTTGACCATTAAACACAACGTTTCTCTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q29570_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29570_PIG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               30-658, gnl|bosTau2|chr11 (10330263-10330881)
               

               
               30-658, gnl|Hg17|chr12 (103410165-103410793)
               

               
               30-658, gnl|Mm7|chr11 (100471169-100470643)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-658, gnl|bosTau2|chr11 (10330263-10330881)
               

               
               30-658, gnl|Hg17|chr12 (103410165-103410793)
               

               
               30-658, gnl|Mm7|chr11 (100471169-100470643)

Expressed library(ies): 48 entry(ies)

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Expressed library(ies): 48 entry(ies)

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               hlv (4.4562)
               

               
               ton (2.106)
               

               
               col (1.95008)
               

               
               mas (1.89274)
               

               
               nms (1.28315)
               

               
               hyp (1.14269)
               

               
               duo (1.03681)
               

               
               ssp (0.948638)
               

               
               pty (0.856287)
               

               
               cst (0.840218)
               

               
               hea (0.817996)
               

               
               nco (0.808669)
               

               
               fcc (0.791139)
               

               
               eje (0.691836)
               

               
               mcp (0.682594)
               

               
               che (0.68157)
               

               
               fhi (0.678311)
               

               
               nje (0.66368)
               

               
               cbr (0.639877)
               

               
               nlu (0.575043)
               

               
               lnt (0.569233)
               

               
               nep (0.551775)
               

               
               fce (0.543183)
               

               
               ese (0.506009)
               

               
               csp (0.483559)
               

               
               ece (0.45861)
               

               
               nca (0.410621)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               cje (0.330469)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (4.4562)
               

               
               ton (2.106)
               

               
               col (1.95008)
               

               
               mas (1.89274)
               

               
               nms (1.28315)
               

               
               hyp (1.14269)
               

               
               duo (1.03681)
               

               
               ssp (0.948638)
               

               
               pty (0.856287)
               

               
               cst (0.840218)
               

               
               hea (0.817996)
               

               
               nco (0.808669)
               

               
               fcc (0.791139)
               

               
               eje (0.691836)
               

               
               mcp (0.682594)
               

               
               che (0.68157)
               

               
               fhi (0.678311)
               

               
               nje (0.66368)
               

               
               cbr (0.639877)
               

               
               nlu (0.575043)
               

               
               lnt (0.569233)
               

               
               nep (0.551775)
               

               
               fce (0.543183)
               

               
               ese (0.506009)
               

               
               csp (0.483559)
               

               
               ece (0.45861)
               

               
               nca (0.410621)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               cje (0.330469)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)

	30-658, gnl\|bosTau2\|chr11 (10330263-10330881)
	30-658, gnl\|Hg17\|chr12 (103410165-103410793)
	30-658, gnl\|Mm7\|chr11 (100471169-100470643)

	hlv (4.4562)
	ton (2.106)
	col (1.95008)
	mas (1.89274)
	nms (1.28315)
	hyp (1.14269)
	duo (1.03681)
	ssp (0.948638)
	pty (0.856287)
	cst (0.840218)
	hea (0.817996)
	nco (0.808669)
	fcc (0.791139)
	eje (0.691836)
	mcp (0.682594)
	che (0.68157)
	fhi (0.678311)
	nje (0.66368)
	cbr (0.639877)
	nlu (0.575043)
	lnt (0.569233)
	nep (0.551775)
	fce (0.543183)
	ese (0.506009)
	csp (0.483559)
	ece (0.45861)
	nca (0.410621)
	cov (0.396458)
	jej (0.395687)
	eep (0.367692)
	ebs (0.354904)
	ill (0.351185)
	fbs (0.350693)
	cje (0.330469)
	cli (0.305623)
	cga (0.279096)
	ute (0.265569)
	ecc (0.23007)
	jca (0.22792)
	fli (0.202881)
	rec (0.17307)
	eye (0.170503)
	cki (0.165235)
	eli (0.151814)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	cly (0.120642)