Non-Coding RNA Search

Ss1.1-rece22c_o7.5

Sequence:


               
               TGCCCAAGGAGATGGACATTCCTTACCTCCCATCGCCCGCCGCCTGGGGCACCACCCTCC
ACAGTCCCTAAATGTTGGCAAACCTTTGTACCAGAGTATGAACTGCAAGCCCATGCAGAT
GTACGTGCTGGACATTAAAGACACCAAGGAGAAGGGGCGAGTCAAATGGAAAGTATTTAA
TAGCAGTTCTGTGGTTGGACCTCCTGAAACTAGCCTGCATACAGTGGTACAAGGCAGGGG
TGAACTCATCATATTTGGAGGACTCATGGACAAGAAACAGAATGTGAAGTACTATCCAAA
AACAAACGCCTTGTACTTTGTGCGAGCAAAGAGATAATATGTTCTAAAACTCTTTCCCTT
TCTGTGGCTTTTAATCTGGAATTTTCCAGTGTGCAAGCATTCGGACTGAGGATTGAGAAA
ACAGAAGGACAAAATTACCCTCATGAACCAAAACCCCGATTCCCAACCTTGCTCACTCTA
GGCTGGGATCAAATCTCCATTAAGAAAAAATTATATAAGTATATAAATATATATTATATA
GACAACTCTGTTTACAAAGAGGGAGAGCTCTCCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCAAGGAGATGGACATTCCTTACCTCCCATCGCCCGCCGCCTGGGGCACCACCCTCC
ACAGTCCCTAAATGTTGGCAAACCTTTGTACCAGAGTATGAACTGCAAGCCCATGCAGAT
GTACGTGCTGGACATTAAAGACACCAAGGAGAAGGGGCGAGTCAAATGGAAAGTATTTAA
TAGCAGTTCTGTGGTTGGACCTCCTGAAACTAGCCTGCATACAGTGGTACAAGGCAGGGG
TGAACTCATCATATTTGGAGGACTCATGGACAAGAAACAGAATGTGAAGTACTATCCAAA
AACAAACGCCTTGTACTTTGTGCGAGCAAAGAGATAATATGTTCTAAAACTCTTTCCCTT
TCTGTGGCTTTTAATCTGGAATTTTCCAGTGTGCAAGCATTCGGACTGAGGATTGAGAAA
ACAGAAGGACAAAATTACCCTCATGAACCAAAACCCCGATTCCCAACCTTGCTCACTCTA
GGCTGGGATCAAATCTCCATTAAGAAAAAATTATATAAGTATATAAATATATATTATATA
GACAACTCTGTTTACAAAGAGGGAGAGCTCTCCGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21595421|gb|AAH32439.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21595421|gb|AAH32439.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               401-554, - strand, RNAz p=0.992065

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-554, - strand, RNAz p=0.992065

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-576, gnl|bosTau2|chr2 (83619229-83619804)
               

               
               2-576, gnl|Hg17|chr1 (16322806-16322232)
               

               
               2-576, gnl|Mm7|chr4 (140578670-140579229)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-576, gnl|bosTau2|chr2 (83619229-83619804)
               

               
               2-576, gnl|Hg17|chr1 (16322806-16322232)
               

               
               2-576, gnl|Mm7|chr4 (140578670-140579229)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ldo (0.0970026)

	2-576, gnl\|bosTau2\|chr2 (83619229-83619804)
	2-576, gnl\|Hg17\|chr1 (16322806-16322232)
	2-576, gnl\|Mm7\|chr4 (140578670-140579229)