Non-Coding RNA Search

Ss1.1-rece24c_a10.5

Sequence:


               
               CCCCCAGCCAGCTAGAGGGAGCTGGTGGCTGGATGCCCCTAGGCAGAGATGGGAAGTGGG
GTCCAGGCAACAGGGACCTCTGCCCCAATCCCGTCCTCTGTTTTCAGTTGCCAAGGCGCC
TGCTGCCTCCAGCACCCTAGATGCTGCTCACATTGCAGCTGCCATCTTCTTGCCGCTGGT
GGCAATGGCGCTCTTGGCCGGAGGAGTGTACCTCTACTTCTCCAGGCTCCAGGGGAAAAG
CCCCCTGCAGCTGCCCCGAACACGACCCCGCCCTTATGACCGCATCACCGTGGAGTCAGC
ATTTGACAATCCGACTTATGAAACTGGAGAGACGAAAGAATATGAAGTCTCCATCTAGGT
GGGGCAGCCTGGGGAAGCCAGCTCAGCCCTGCATCACAGCCCAGCAGCAGAGCTCCCAGC
TTCCTGCTGCCCCTCCACCTCCTGTACATACCACTGGGAAGAGATGCCACCAATCCCTCC
AGAAGTTGTGCCCTTCCCGCCTGCAATACCCACCAGGGCCTATTTTCTTGGCACCACTGC
CCACTTAGGGCCTTTCCTTGGGTCCAAGTCAGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCAGCCAGCTAGAGGGAGCTGGTGGCTGGATGCCCCTAGGCAGAGATGGGAAGTGGG
GTCCAGGCAACAGGGACCTCTGCCCCAATCCCGTCCTCTGTTTTCAGTTGCCAAGGCGCC
TGCTGCCTCCAGCACCCTAGATGCTGCTCACATTGCAGCTGCCATCTTCTTGCCGCTGGT
GGCAATGGCGCTCTTGGCCGGAGGAGTGTACCTCTACTTCTCCAGGCTCCAGGGGAAAAG
CCCCCTGCAGCTGCCCCGAACACGACCCCGCCCTTATGACCGCATCACCGTGGAGTCAGC
ATTTGACAATCCGACTTATGAAACTGGAGAGACGAAAGAATATGAAGTCTCCATCTAGGT
GGGGCAGCCTGGGGAAGCCAGCTCAGCCCTGCATCACAGCCCAGCAGCAGAGCTCCCAGC
TTCCTGCTGCCCCTCCACCTCCTGTACATACCACTGGGAAGAGATGCCACCAATCCCTCC
AGAAGTTGTGCCCTTCCCGCCTGCAATACCCACCAGGGCCTATTTTCTTGGCACCACTGC
CCACTTAGGGCCTTTCCTTGGGTCCAAGTCAGGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8R488_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8R488_RAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-226, + strand, RNAz p=0.997349
               

               
               329-442, - strand, RNAz p=0.961029

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-226, + strand, RNAz p=0.997349
               

               
               329-442, - strand, RNAz p=0.961029

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               357-445, + strand, RNAmicro p=0.998638
               

               
               106-221, - strand, RNAmicro p=0.998568
               

               
               43-218, + strand, RNAmicro p=0.997526
               

               
               350-458, - strand, RNAmicro p=0.996462

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               357-445, + strand, RNAmicro p=0.998638
               

               
               106-221, - strand, RNAmicro p=0.998568
               

               
               43-218, + strand, RNAmicro p=0.997526
               

               
               350-458, - strand, RNAmicro p=0.996462

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-226, gnl|bosTau2|chr19 (13864910-13864680)
               

               
               1-226, gnl|canFam2|chr9 (46447077-46447234)
               

               
               1-226, gnl|danRer3|chr15 (31022291-31022421)
               

               
               1-226, gnl|dasNov1|scaffold_17926 (17052-17209)
               

               
               1-226, gnl|echTel1|scaffold_318787 (54354-54509)
               

               
               1-226, gnl|fr1|chrUn (11145246-11145404)
               

               
               1-226, gnl|galGal2|chr19 (5529115-5529258)
               

               
               1-226, gnl|hg17|chr17 (24307489-24307646)
               

               
               1-226, gnl|Hg17|chr17 (24307723-24307493)
               

               
               1-226, gnl|loxAfr1|scaffold_608 (168404-168247)
               

               
               1-226, gnl|mm7|chr11 (78059236-78059077)
               

               
               1-226, gnl|Mm7|chr11 (78059001-78059230)
               

               
               1-226, gnl|monDom2|scaffold_44 (14876574-14876737)
               

               
               1-226, gnl|oryCun1|scaffold_192408 (8985-8828)
               

               
               1-226, gnl|panTro1|chr19 (27652880-27653037)
               

               
               1-226, gnl|rheMac2|chr16 (24174405-24174562)
               

               
               1-226, gnl|rn3|chr10 (64033281-64033122)
               

               
               1-226, gnl|xenTro1|scaffold_370 (1056940-1056785)
               


               
               329-576, gnl|bosTau2|chr19 (13864313-13864061)
               

               
               329-576, gnl|Hg17|chr17 (24307122-24306871)
               

               
               329-576, gnl|Mm7|chr11 (78059604-78059834)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-226, gnl|bosTau2|chr19 (13864910-13864680)
               

               
               1-226, gnl|canFam2|chr9 (46447077-46447234)
               

               
               1-226, gnl|danRer3|chr15 (31022291-31022421)
               

               
               1-226, gnl|dasNov1|scaffold_17926 (17052-17209)
               

               
               1-226, gnl|echTel1|scaffold_318787 (54354-54509)
               

               
               1-226, gnl|fr1|chrUn (11145246-11145404)
               

               
               1-226, gnl|galGal2|chr19 (5529115-5529258)
               

               
               1-226, gnl|hg17|chr17 (24307489-24307646)
               

               
               1-226, gnl|Hg17|chr17 (24307723-24307493)
               

               
               1-226, gnl|loxAfr1|scaffold_608 (168404-168247)
               

               
               1-226, gnl|mm7|chr11 (78059236-78059077)
               

               
               1-226, gnl|Mm7|chr11 (78059001-78059230)
               

               
               1-226, gnl|monDom2|scaffold_44 (14876574-14876737)
               

               
               1-226, gnl|oryCun1|scaffold_192408 (8985-8828)
               

               
               1-226, gnl|panTro1|chr19 (27652880-27653037)
               

               
               1-226, gnl|rheMac2|chr16 (24174405-24174562)
               

               
               1-226, gnl|rn3|chr10 (64033281-64033122)
               

               
               1-226, gnl|xenTro1|scaffold_370 (1056940-1056785)
               


               
               329-576, gnl|bosTau2|chr19 (13864313-13864061)
               

               
               329-576, gnl|Hg17|chr17 (24307122-24306871)
               

               
               329-576, gnl|Mm7|chr11 (78059604-78059834)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jej (0.0989218)

	1-226, + strand, RNAz p=0.997349
	329-442, - strand, RNAz p=0.961029

	357-445, + strand, RNAmicro p=0.998638
	106-221, - strand, RNAmicro p=0.998568
	43-218, + strand, RNAmicro p=0.997526
	350-458, - strand, RNAmicro p=0.996462

	1-226, gnl\|bosTau2\|chr19 (13864910-13864680)
	1-226, gnl\|canFam2\|chr9 (46447077-46447234)
	1-226, gnl\|danRer3\|chr15 (31022291-31022421)
	1-226, gnl\|dasNov1\|scaffold_17926 (17052-17209)
	1-226, gnl\|echTel1\|scaffold_318787 (54354-54509)
	1-226, gnl\|fr1\|chrUn (11145246-11145404)
	1-226, gnl\|galGal2\|chr19 (5529115-5529258)
	1-226, gnl\|hg17\|chr17 (24307489-24307646)
	1-226, gnl\|Hg17\|chr17 (24307723-24307493)
	1-226, gnl\|loxAfr1\|scaffold_608 (168404-168247)
	1-226, gnl\|mm7\|chr11 (78059236-78059077)
	1-226, gnl\|Mm7\|chr11 (78059001-78059230)
	1-226, gnl\|monDom2\|scaffold_44 (14876574-14876737)
	1-226, gnl\|oryCun1\|scaffold_192408 (8985-8828)
	1-226, gnl\|panTro1\|chr19 (27652880-27653037)
	1-226, gnl\|rheMac2\|chr16 (24174405-24174562)
	1-226, gnl\|rn3\|chr10 (64033281-64033122)
	1-226, gnl\|xenTro1\|scaffold_370 (1056940-1056785)

	329-576, gnl\|bosTau2\|chr19 (13864313-13864061)
	329-576, gnl\|Hg17\|chr17 (24307122-24306871)
	329-576, gnl\|Mm7\|chr11 (78059604-78059834)