Non-Coding RNA Search

Ss1.1-rece24c_h18.5

Sequence:


               
               GCCACACCAAACGCCAGCCTCACACTGTTTGGTCCGGGCGCAGTCAGCGAAGTGAGCAAC
GGGTCGTGGAGGAGGGCGGGCTGCACTTGGATGCTGCCGCTTCTGATCTTGCACCTACTC
CTCAAATTTTGATGTGAGTGCCCCTTCCCCCGCCGGGGAGCAGCTGCCGCCACCGCCACC
GCCAACACATCAGCAATGGCAACGACAGCACCACAAGCATCCCCGTTCCAAATCAGACAT
GAGCCCACGAAATGCAGAGAATCAGAGCTTAATGGGACACACATTCCAGGGAGGGGAGCG
AAGGATACTTTGGGAAAACAAGGTGAACAGGAAATTGGAAGCCTCCTGGCAGACACGTAG
GTACAGCTGTTTTCTTTCTTTTTCCAAACGAGAAGAAGCCACGCCGGCCTTGGACCCACC
CGCAAGCTGCATTGCGTGACCTCTGTTACCAGGCGGGCTGGGGCTCAGCTGCCGCTCTGC
CCACCACAGTGCACCCCCACTCCCCGGGAAAATTCCGGAGTCGGCCACCCCAAATTCAAT
CAGTCAATAGAGACGAACACAGAGTGAGGCGTGCGGGCCCAGGTGTGCCTCTCCGGCCCC
CTTCCTAGACTGTGTCCCTATTGTGTGTGTGATGAAATGCAGAAACACAAAAAAAATAAA
TAAAAAGAAAACTAAAACAAGACAGCCTGACAGCTACAACAAGCCCACCATCAACAGTCA
CAAAGGATATGGTTAAACTTCTTTTTTTTTTTTTTTTTCATTGTACAACGTGGACATCAC
AGATAATAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACACCAAACGCCAGCCTCACACTGTTTGGTCCGGGCGCAGTCAGCGAAGTGAGCAAC
GGGTCGTGGAGGAGGGCGGGCTGCACTTGGATGCTGCCGCTTCTGATCTTGCACCTACTC
CTCAAATTTTGATGTGAGTGCCCCTTCCCCCGCCGGGGAGCAGCTGCCGCCACCGCCACC
GCCAACACATCAGCAATGGCAACGACAGCACCACAAGCATCCCCGTTCCAAATCAGACAT
GAGCCCACGAAATGCAGAGAATCAGAGCTTAATGGGACACACATTCCAGGGAGGGGAGCG
AAGGATACTTTGGGAAAACAAGGTGAACAGGAAATTGGAAGCCTCCTGGCAGACACGTAG
GTACAGCTGTTTTCTTTCTTTTTCCAAACGAGAAGAAGCCACGCCGGCCTTGGACCCACC
CGCAAGCTGCATTGCGTGACCTCTGTTACCAGGCGGGCTGGGGCTCAGCTGCCGCTCTGC
CCACCACAGTGCACCCCCACTCCCCGGGAAAATTCCGGAGTCGGCCACCCCAAATTCAAT
CAGTCAATAGAGACGAACACAGAGTGAGGCGTGCGGGCCCAGGTGTGCCTCTCCGGCCCC
CTTCCTAGACTGTGTCCCTATTGTGTGTGTGATGAAATGCAGAAACACAAAAAAAATAAA
TAAAAAGAAAACTAAAACAAGACAGCCTGACAGCTACAACAAGCCCACCATCAACAGTCA
CAAAGGATATGGTTAAACTTCTTTTTTTTTTTTTTTTTCATTGTACAACGTGGACATCAC
AGATAATAAGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               107-222, - strand, RNAz p=0.866614

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-222, - strand, RNAz p=0.866614

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               31-792, gnl|bosTau2|chr29 (26754062-26754794)
               

               
               31-792, gnl|Hg17|chr11 (131710149-131710883)
               

               
               31-792, gnl|Mm7|chr9 (28879184-28878338)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-792, gnl|bosTau2|chr29 (26754062-26754794)
               

               
               31-792, gnl|Hg17|chr11 (131710149-131710883)
               

               
               31-792, gnl|Mm7|chr9 (28879184-28878338)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	31-792, gnl\|bosTau2\|chr29 (26754062-26754794)
	31-792, gnl\|Hg17\|chr11 (131710149-131710883)
	31-792, gnl\|Mm7\|chr9 (28879184-28878338)