Non-Coding RNA Search

Ss1.1-rece24c_i9.5

Sequence:


               
               GTGAGGCCCCCGGGGCAGAGGGCCGCACCATCCCGTTGATGTCAGGTCTCTCCAGAGCCG
CTTACCCTGCCGAGCTCCGATTCATGTACTTCGTGGATGGCCGAGGCCCAGATGGAGGCT
TTCACCAAGTCAAGGAGGCTGTCCTGCGGTATCTTCGGGCCTTCAGCTGACTCTCCTTTT
GTCACCACAGGACCCAGAAAGTTGGAGCAAAGCTGGAAATGGAGTTAGAGAGCCCAGAGC
CTTGCAGGGCCTTGCATTCCTTTGCAGCATGTTGTATGTGACCCTGGGATCAATTGCCCA
TGGCCTCCATTACCGTGGGCTCCCAGCAAGGCCCCAGGGAAACTGGGGACTCCCCCAGGA
AGGCCTGGAGAAGCTGGGGACTCCCCCAGGAAGGCCACAAGGAAGCTGGGGACTCCCCCC
AGGAAGGCCATGGGGAAACCAGAAAGTAGAGGCGAGAGGACATGCTGATACTCAGCAGTC
ACCCGTGTTTTTTGCCTCCTGCCTAATTGGATGTGTAGCCTGGCACTGTATGCCTACATC
TTCCCCTGGGACCGGGCTCTGGTGTAGAGGTGCCTTCTTTGCCTGGATAAGGAGCTGGAA
GCCTGCACTGCTCGCCCCGACTGGGTGGTTTCCCTGAGGCCTGGGGAAGCCCTGAACAGA
TGTTAGGGGAACATGACAGTTTTGATATCATTCACACTCACACTCCTGCTGGGTCTCCAG
TGACGTCACACACTTCTGAAAGTCACGTGGAAAATGCACCCAGCACTGTCCTGTATTTAT
TTTTGCTGCATGTCTGTCATTAAAGACACACCTAGAAACCGTTCTGAATAGATAGGAGAG
GACAGGGAGCAGGTGGGGTGAAGAGCAGATCAGCTGGGATCAAAAGCCAGTGCTCTGGAG
TTCCCATCATGGCACAGCGGAAACAAATACATCTAGGAACCAACCATGAGGTTGCAGGTT
CAATCCCTGGCCTCACTCAGTGGGTTAAGAATCTGGCATTGCCATGAGCTGTGGTGTAGG
TCACAGACATGGCTTGGATCTGGCGTGGCTGTGGCTGTGGCTGTGGCCGGCTCTAGCTCC
AGTTTGACTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGGCCCCCGGGGCAGAGGGCCGCACCATCCCGTTGATGTCAGGTCTCTCCAGAGCCG
CTTACCCTGCCGAGCTCCGATTCATGTACTTCGTGGATGGCCGAGGCCCAGATGGAGGCT
TTCACCAAGTCAAGGAGGCTGTCCTGCGGTATCTTCGGGCCTTCAGCTGACTCTCCTTTT
GTCACCACAGGACCCAGAAAGTTGGAGCAAAGCTGGAAATGGAGTTAGAGAGCCCAGAGC
CTTGCAGGGCCTTGCATTCCTTTGCAGCATGTTGTATGTGACCCTGGGATCAATTGCCCA
TGGCCTCCATTACCGTGGGCTCCCAGCAAGGCCCCAGGGAAACTGGGGACTCCCCCAGGA
AGGCCTGGAGAAGCTGGGGACTCCCCCAGGAAGGCCACAAGGAAGCTGGGGACTCCCCCC
AGGAAGGCCATGGGGAAACCAGAAAGTAGAGGCGAGAGGACATGCTGATACTCAGCAGTC
ACCCGTGTTTTTTGCCTCCTGCCTAATTGGATGTGTAGCCTGGCACTGTATGCCTACATC
TTCCCCTGGGACCGGGCTCTGGTGTAGAGGTGCCTTCTTTGCCTGGATAAGGAGCTGGAA
GCCTGCACTGCTCGCCCCGACTGGGTGGTTTCCCTGAGGCCTGGGGAAGCCCTGAACAGA
TGTTAGGGGAACATGACAGTTTTGATATCATTCACACTCACACTCCTGCTGGGTCTCCAG
TGACGTCACACACTTCTGAAAGTCACGTGGAAAATGCACCCAGCACTGTCCTGTATTTAT
TTTTGCTGCATGTCTGTCATTAAAGACACACCTAGAAACCGTTCTGAATAGATAGGAGAG
GACAGGGAGCAGGTGGGGTGAAGAGCAGATCAGCTGGGATCAAAAGCCAGTGCTCTGGAG
TTCCCATCATGGCACAGCGGAAACAAATACATCTAGGAACCAACCATGAGGTTGCAGGTT
CAATCCCTGGCCTCACTCAGTGGGTTAAGAATCTGGCATTGCCATGAGCTGTGGTGTAGG
TCACAGACATGGCTTGGATCTGGCGTGGCTGTGGCTGTGGCTGTGGCCGGCTCTAGCTCC
AGTTTGACTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-520, - strand, RNAz p=0.999969

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-520, - strand, RNAz p=0.999969

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               337-480, - strand, RNAmicro p=0.999994

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               337-480, - strand, RNAmicro p=0.999994

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               3-150, gnl|bosTau2|chr29 (25670118-25669971)
               

               
               3-150, gnl|Hg17|chr11 (125668013-125668160)
               

               
               3-150, gnl|Mm7|chr9 (35083606-35083459)
               


               
               322-868, gnl|bosTau2|chr29 (25667971-25667413)
               

               
               322-868, gnl|canFam2|chr5 (11224004-11223123)
               

               
               322-868, gnl|dasNov1|scaffold_37298 (13774-14670)
               

               
               322-868, gnl|echTel1|scaffold_313670 (37809-38539)
               

               
               322-868, gnl|hg17|chr11 (125668563-125669437)
               

               
               322-868, gnl|Hg17|chr11 (125668995-125669535)
               

               
               322-868, gnl|loxAfr1|scaffold_90592 (493-1450)
               

               
               322-868, gnl|mm7|chr9 (35082937-35082157)
               

               
               322-868, gnl|monDom2|scaffold_15 (13223170-13223992)
               

               
               322-868, gnl|oryCun1|scaffold_201011 (13226-14057)
               

               
               322-868, gnl|panTro1|chr9 (127754925-127755802)
               

               
               322-868, gnl|rheMac2|chr14 (124439982-124440860)
               

               
               322-868, gnl|rn3|chr8 (34975814-34975073)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-150, gnl|bosTau2|chr29 (25670118-25669971)
               

               
               3-150, gnl|Hg17|chr11 (125668013-125668160)
               

               
               3-150, gnl|Mm7|chr9 (35083606-35083459)
               


               
               322-868, gnl|bosTau2|chr29 (25667971-25667413)
               

               
               322-868, gnl|canFam2|chr5 (11224004-11223123)
               

               
               322-868, gnl|dasNov1|scaffold_37298 (13774-14670)
               

               
               322-868, gnl|echTel1|scaffold_313670 (37809-38539)
               

               
               322-868, gnl|hg17|chr11 (125668563-125669437)
               

               
               322-868, gnl|Hg17|chr11 (125668995-125669535)
               

               
               322-868, gnl|loxAfr1|scaffold_90592 (493-1450)
               

               
               322-868, gnl|mm7|chr9 (35082937-35082157)
               

               
               322-868, gnl|monDom2|scaffold_15 (13223170-13223992)
               

               
               322-868, gnl|oryCun1|scaffold_201011 (13226-14057)
               

               
               322-868, gnl|panTro1|chr9 (127754925-127755802)
               

               
               322-868, gnl|rheMac2|chr14 (124439982-124440860)
               

               
               322-868, gnl|rn3|chr8 (34975814-34975073)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               csk (0.140746)
               

               
               cst (0.140036)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               csk (0.140746)
               

               
               cst (0.140036)

	3-150, gnl\|bosTau2\|chr29 (25670118-25669971)
	3-150, gnl\|Hg17\|chr11 (125668013-125668160)
	3-150, gnl\|Mm7\|chr9 (35083606-35083459)

	322-868, gnl\|bosTau2\|chr29 (25667971-25667413)
	322-868, gnl\|canFam2\|chr5 (11224004-11223123)
	322-868, gnl\|dasNov1\|scaffold_37298 (13774-14670)
	322-868, gnl\|echTel1\|scaffold_313670 (37809-38539)
	322-868, gnl\|hg17\|chr11 (125668563-125669437)
	322-868, gnl\|Hg17\|chr11 (125668995-125669535)
	322-868, gnl\|loxAfr1\|scaffold_90592 (493-1450)
	322-868, gnl\|mm7\|chr9 (35082937-35082157)
	322-868, gnl\|monDom2\|scaffold_15 (13223170-13223992)
	322-868, gnl\|oryCun1\|scaffold_201011 (13226-14057)
	322-868, gnl\|panTro1\|chr9 (127754925-127755802)
	322-868, gnl\|rheMac2\|chr14 (124439982-124440860)
	322-868, gnl\|rn3\|chr8 (34975814-34975073)