Non-Coding RNA Search

Ss1.1-rece27c_a16.5

Sequence:


               
               GTAGGTGGTGGGGAGAGGTAGGGAAGAATGAGCTGAATTGGGAGCTTGCAGTTTAGAATG
TGCTTGAATGTTCTTGCCCTGTGACCTCTCATACATTGTTAGCTCTGCAAAGCTCATCTT
TGGGAGGTGAGCAGAGGAAATAGGGCAAAGCAAAGTTTTTGCTATCTATTGAATCACAAA
AATAGCAGCTACATGGCTACACAAAAGTTCACAGTGGGGTAGGATCATAGGACAGCTGGG
TCATTAGGACAGGCCAGAAACCCTGGTCACTGAATGAAATTGGAAAGTCTCTAAGCAGAG
GCAGGCCAGGGGACTTCATGTTTCAGTTCATTTAATAAATACAAATTTTTAATTGAGAAT
CTGCTATGGACCAGGCACTGTTCTAGATACTGGAGACAATGGTGACTACACAAGTGTTGT
CTCTGCCCTCCTGGAGCTTATATTGTCCTAGGAGAACAAACCAAAAATAAAATTATTACA
AACGGTGATTAGCACCAGAAAGGAAATTAAGAAGGGCCAGAGAAGCTCATTGGCAAGATC
TTTCAGATCCTCTAGAATCACGCTAAAAATCCATACATTTTGACCATAGGACCGGAAACA
TACCAACTCAATGCCTTTTCAACCGTGCTATTTTAATTATGGTACCTGCTGCTGCCATTC
ATCATAGAGCCCTTCTTTGGGAGATATGTCAGCATTCTTATTTGTTAATGCTGCAATGAT
ACTAAGCCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGTGGTGGGGAGAGGTAGGGAAGAATGAGCTGAATTGGGAGCTTGCAGTTTAGAATG
TGCTTGAATGTTCTTGCCCTGTGACCTCTCATACATTGTTAGCTCTGCAAAGCTCATCTT
TGGGAGGTGAGCAGAGGAAATAGGGCAAAGCAAAGTTTTTGCTATCTATTGAATCACAAA
AATAGCAGCTACATGGCTACACAAAAGTTCACAGTGGGGTAGGATCATAGGACAGCTGGG
TCATTAGGACAGGCCAGAAACCCTGGTCACTGAATGAAATTGGAAAGTCTCTAAGCAGAG
GCAGGCCAGGGGACTTCATGTTTCAGTTCATTTAATAAATACAAATTTTTAATTGAGAAT
CTGCTATGGACCAGGCACTGTTCTAGATACTGGAGACAATGGTGACTACACAAGTGTTGT
CTCTGCCCTCCTGGAGCTTATATTGTCCTAGGAGAACAAACCAAAAATAAAATTATTACA
AACGGTGATTAGCACCAGAAAGGAAATTAAGAAGGGCCAGAGAAGCTCATTGGCAAGATC
TTTCAGATCCTCTAGAATCACGCTAAAAATCCATACATTTTGACCATAGGACCGGAAACA
TACCAACTCAATGCCTTTTCAACCGTGCTATTTTAATTATGGTACCTGCTGCTGCCATTC
ATCATAGAGCCCTTCTTTGGGAGATATGTCAGCATTCTTATTTGTTAATGCTGCAATGAT
ACTAAGCCTTAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               3-121, gnl|bosTau2|chr10 (29387049-29386931)
               

               
               3-121, gnl|canFam2|chr8 (30341331-30341481)
               

               
               3-121, gnl|echTel1|scaffold_293870 (6590-6452)
               

               
               3-121, gnl|hg17|chr14 (50513164-50513308)
               

               
               3-121, gnl|Hg17|chr14 (50513336-50513209)
               

               
               3-121, gnl|mm7|chr12 (68186779-68186929)
               

               
               3-121, gnl|Mm7|chr12 (68186956-68186844)
               

               
               3-121, gnl|oryCun1|scaffold_204695 (78762-78899)
               

               
               3-121, gnl|panTro1|chr15 (49932058-49932202)
               

               
               3-121, gnl|rheMac2|chr7 (114024378-114024522)
               

               
               3-121, gnl|rn3|chr6 (92362749-92362902)
               


               
               145-732, gnl|bosTau2|chr10 (29386927-29386340)
               

               
               145-732, gnl|Hg17|chr14 (50513205-50512606)
               

               
               145-732, gnl|Mm7|chr12 (68186820-68186333)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-121, gnl|bosTau2|chr10 (29387049-29386931)
               

               
               3-121, gnl|canFam2|chr8 (30341331-30341481)
               

               
               3-121, gnl|echTel1|scaffold_293870 (6590-6452)
               

               
               3-121, gnl|hg17|chr14 (50513164-50513308)
               

               
               3-121, gnl|Hg17|chr14 (50513336-50513209)
               

               
               3-121, gnl|mm7|chr12 (68186779-68186929)
               

               
               3-121, gnl|Mm7|chr12 (68186956-68186844)
               

               
               3-121, gnl|oryCun1|scaffold_204695 (78762-78899)
               

               
               3-121, gnl|panTro1|chr15 (49932058-49932202)
               

               
               3-121, gnl|rheMac2|chr7 (114024378-114024522)
               

               
               3-121, gnl|rn3|chr6 (92362749-92362902)
               


               
               145-732, gnl|bosTau2|chr10 (29386927-29386340)
               

               
               145-732, gnl|Hg17|chr14 (50513205-50512606)
               

               
               145-732, gnl|Mm7|chr12 (68186820-68186333)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ece (0.229305)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	3-121, gnl\|bosTau2\|chr10 (29387049-29386931)
	3-121, gnl\|canFam2\|chr8 (30341331-30341481)
	3-121, gnl\|echTel1\|scaffold_293870 (6590-6452)
	3-121, gnl\|hg17\|chr14 (50513164-50513308)
	3-121, gnl\|Hg17\|chr14 (50513336-50513209)
	3-121, gnl\|mm7\|chr12 (68186779-68186929)
	3-121, gnl\|Mm7\|chr12 (68186956-68186844)
	3-121, gnl\|oryCun1\|scaffold_204695 (78762-78899)
	3-121, gnl\|panTro1\|chr15 (49932058-49932202)
	3-121, gnl\|rheMac2\|chr7 (114024378-114024522)
	3-121, gnl\|rn3\|chr6 (92362749-92362902)

	145-732, gnl\|bosTau2\|chr10 (29386927-29386340)
	145-732, gnl\|Hg17\|chr14 (50513205-50512606)
	145-732, gnl\|Mm7\|chr12 (68186820-68186333)