Non-Coding RNA Search

Ss1.1-rece27c_b3.5

Sequence:


               
               TTCACAGTACAGGTGAAACCAACAGCGCCCCCCTTCCCTTCTCCTGCACAGAATCTCTCC
ACTGGGTCGGGTCCGCCTGCCCACACTGGCTCTTTAAGAAAACCAAGAGCTGACCATTTT
TGTGAGCCGGGAGGATTTGGGGGCCAACCCCAAACAAGCTGTCCTGCCTTGAAGGTTGAC
AGTTGATTTACACCTAGGTCACACAGAGAGTCTATGACATAGCACTGAGAAGGCACAGGG
CGGTAGGGGGTGGGGGAGAGAGAAAACCCACAGGGTCTTCCCTGATGGGGCCACATCATG
GTAAGAAATGAACTCTTAACTCTGTCTTCCAGCCAAGCATTAAGGACACGGAGGCTGCCA
CCACTCAGATCTCCCAGGCAGGCCCCCGCGCCCAGCCCCACCGTTTCAAGGCGAGCATGT
CTGCGTTAGGTTTGTGCATTTTCCTAGAGAACTCACTCCAGCAGATCATTTCTCAGGCTC
AAAGACGCTGGCCTTGTTAATATTTCATTTAGAACATACTGCGGAGAGCGTCTCATTTAT
ATTACTTCCATAATTAATGGTGAGAGCGCAGGCACTGCCTTGATACAGACAGATCTCGTC
ACCGTGGTCGATGCGTAAGGAGAAACAATAGATATTTCATTCACCAGCAGCTTGTCGCTA
GTTAGTGGGAATGATCATGCATGCTGTTGCTTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACAGTACAGGTGAAACCAACAGCGCCCCCCTTCCCTTCTCCTGCACAGAATCTCTCC
ACTGGGTCGGGTCCGCCTGCCCACACTGGCTCTTTAAGAAAACCAAGAGCTGACCATTTT
TGTGAGCCGGGAGGATTTGGGGGCCAACCCCAAACAAGCTGTCCTGCCTTGAAGGTTGAC
AGTTGATTTACACCTAGGTCACACAGAGAGTCTATGACATAGCACTGAGAAGGCACAGGG
CGGTAGGGGGTGGGGGAGAGAGAAAACCCACAGGGTCTTCCCTGATGGGGCCACATCATG
GTAAGAAATGAACTCTTAACTCTGTCTTCCAGCCAAGCATTAAGGACACGGAGGCTGCCA
CCACTCAGATCTCCCAGGCAGGCCCCCGCGCCCAGCCCCACCGTTTCAAGGCGAGCATGT
CTGCGTTAGGTTTGTGCATTTTCCTAGAGAACTCACTCCAGCAGATCATTTCTCAGGCTC
AAAGACGCTGGCCTTGTTAATATTTCATTTAGAACATACTGCGGAGAGCGTCTCATTTAT
ATTACTTCCATAATTAATGGTGAGAGCGCAGGCACTGCCTTGATACAGACAGATCTCGTC
ACCGTGGTCGATGCGTAAGGAGAAACAATAGATATTTCATTCACCAGCAGCTTGTCGCTA
GTTAGTGGGAATGATCATGCATGCTGTTGCTTTAAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               383-696, gnl|bosTau2|chr18 (3176645-3176960)
               

               
               383-696, gnl|Hg17|chr16 (77794781-77794467)
               

               
               383-696, gnl|Mm7|chr8 (113956300-113955992)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               383-696, gnl|bosTau2|chr18 (3176645-3176960)
               

               
               383-696, gnl|Hg17|chr16 (77794781-77794467)
               

               
               383-696, gnl|Mm7|chr8 (113956300-113955992)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ebs (0.118301)

	383-696, gnl\|bosTau2\|chr18 (3176645-3176960)
	383-696, gnl\|Hg17\|chr16 (77794781-77794467)
	383-696, gnl\|Mm7\|chr8 (113956300-113955992)