Non-Coding RNA Search

Ss1.1-rece27c_k24.5

Sequence:


               
               ACAGATTGGAGCTAGCGGATCCTACTGCCCTCAGCATGTCACGCTGCCTGTCACCGACAC
CTTCTTTGATGTTTCCGAGCAAAATGCCCCGGCCCCCTTACTGGGCGTTGTGGACCTGAA
CCCCCTGGGGAGGAAGGGTTACAGCGTGCCCAAGGTGGGCACCATCCAAGTGACCTTATT
TAACCCCAACCAGACTGTGGTGAAGATGTTCCTTGTGACCTTTGACTTCTCGGACATGCC
TGCTGCCCACATGACCTTCCTGCGCCACCGACTCTTTTTGGTGCCTGTGGGTGAGGAGGG
AAATGCTAGCCCCACCTGCCGCCTCCTCTGCTACTTGTTGCACCTCAGGTTTCTGAGCTC
CCGCTCAGGCCGCTTAAGCCTACATGGAGACATACGCCTGCTTTTTTCCCACCAGAGCCT
GCAATTGAACACAGGGCTCCCCTACTAACTGCAGGCTGTGACTGATGCCCCTCACAATCC
ACGTTATTCACCTATTGCCCTGATTGCCAGTGCCCTGAACCCATGTGGGCCAAGGACCTG
CCCAACCTGCTTCATCCTGTACAGAGCAAACACGTGGAGAGGTGGCGAGAGACCCTTCAG
GCTTGAATTAAAGCCCTCGCCATGCTCATGCCCAAATTGATTATTGGGGTGTTTAAAACT
TCTGATCTTACCATACTCTGCCCTACTCTGAGTACTCCATGTGCCTGCCCCCTCCCTTGG
GTTTCCCAGGCCAGCTGAGGTAGCAGGGAGGAACTGGAGCTACCCCGAGATTGTCCTAAG
TTCCCAGGCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGATTGGAGCTAGCGGATCCTACTGCCCTCAGCATGTCACGCTGCCTGTCACCGACAC
CTTCTTTGATGTTTCCGAGCAAAATGCCCCGGCCCCCTTACTGGGCGTTGTGGACCTGAA
CCCCCTGGGGAGGAAGGGTTACAGCGTGCCCAAGGTGGGCACCATCCAAGTGACCTTATT
TAACCCCAACCAGACTGTGGTGAAGATGTTCCTTGTGACCTTTGACTTCTCGGACATGCC
TGCTGCCCACATGACCTTCCTGCGCCACCGACTCTTTTTGGTGCCTGTGGGTGAGGAGGG
AAATGCTAGCCCCACCTGCCGCCTCCTCTGCTACTTGTTGCACCTCAGGTTTCTGAGCTC
CCGCTCAGGCCGCTTAAGCCTACATGGAGACATACGCCTGCTTTTTTCCCACCAGAGCCT
GCAATTGAACACAGGGCTCCCCTACTAACTGCAGGCTGTGACTGATGCCCCTCACAATCC
ACGTTATTCACCTATTGCCCTGATTGCCAGTGCCCTGAACCCATGTGGGCCAAGGACCTG
CCCAACCTGCTTCATCCTGTACAGAGCAAACACGTGGAGAGGTGGCGAGAGACCCTTCAG
GCTTGAATTAAAGCCCTCGCCATGCTCATGCCCAAATTGATTATTGGGGTGTTTAAAACT
TCTGATCTTACCATACTCTGCCCTACTCTGAGTACTCCATGTGCCTGCCCCCTCCCTTGG
GTTTCCCAGGCCAGCTGAGGTAGCAGGGAGGAACTGGAGCTACCCCGAGATTGTCCTAAG
TTCCCAGGCAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55662804|emb|CAH70999.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55662804|emb|CAH70999.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               343-461, - strand, RNAz p=0.5432
               

               
               542-792, - strand, RNAz p=0.942469

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-461, - strand, RNAz p=0.5432
               

               
               542-792, - strand, RNAz p=0.942469

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               3-141, gnl|bosTau2|chr8 (27893170-27893032)
               

               
               3-141, gnl|canFam2|chr11 (54711667-54711791)
               

               
               3-141, gnl|danRer3|chr5 (9191913-9191788)
               

               
               3-141, gnl|echTel1|scaffold_307714 (6601-6725)
               

               
               3-141, gnl|fr1|chrUn (250556255-250556380)
               

               
               3-141, gnl|hg17|chr3 (115433331-115433456)
               

               
               3-141, gnl|Hg17|chr9 (35096349-35096224)
               

               
               3-141, gnl|loxAfr1|scaffold_199032 (1176-1053)
               

               
               3-141, gnl|mm7|chr4 (43048191-43048316)
               

               
               3-141, gnl|Mm7|chr4 (43048290-43048167)
               

               
               3-141, gnl|monDom2|scaffold_17 (46809656-46809531)
               

               
               3-141, gnl|oryCun1|scaffold_210675 (38662-38538)
               

               
               3-141, gnl|panTro1|chr2 (117139608-117139733)
               

               
               3-141, gnl|rheMac2|chr2 (34244365-34244490)
               

               
               3-141, gnl|rn3|chr5 (59525222-59525347)
               

               
               3-141, gnl|tetNig1|chr12 (5462041-5462166)
               

               
               3-141, gnl|xenTro1|scaffold_713 (469737-469612)
               


               
               343-792, gnl|bosTau2|chr8 (27892310-27891863)
               

               
               343-792, gnl|Hg17|chr9 (35095377-35094932)
               

               
               343-792, gnl|Mm7|chr4 (43047509-43047064)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-141, gnl|bosTau2|chr8 (27893170-27893032)
               

               
               3-141, gnl|canFam2|chr11 (54711667-54711791)
               

               
               3-141, gnl|danRer3|chr5 (9191913-9191788)
               

               
               3-141, gnl|echTel1|scaffold_307714 (6601-6725)
               

               
               3-141, gnl|fr1|chrUn (250556255-250556380)
               

               
               3-141, gnl|hg17|chr3 (115433331-115433456)
               

               
               3-141, gnl|Hg17|chr9 (35096349-35096224)
               

               
               3-141, gnl|loxAfr1|scaffold_199032 (1176-1053)
               

               
               3-141, gnl|mm7|chr4 (43048191-43048316)
               

               
               3-141, gnl|Mm7|chr4 (43048290-43048167)
               

               
               3-141, gnl|monDom2|scaffold_17 (46809656-46809531)
               

               
               3-141, gnl|oryCun1|scaffold_210675 (38662-38538)
               

               
               3-141, gnl|panTro1|chr2 (117139608-117139733)
               

               
               3-141, gnl|rheMac2|chr2 (34244365-34244490)
               

               
               3-141, gnl|rn3|chr5 (59525222-59525347)
               

               
               3-141, gnl|tetNig1|chr12 (5462041-5462166)
               

               
               3-141, gnl|xenTro1|scaffold_713 (469737-469612)
               


               
               343-792, gnl|bosTau2|chr8 (27892310-27891863)
               

               
               343-792, gnl|Hg17|chr9 (35095377-35094932)
               

               
               343-792, gnl|Mm7|chr4 (43047509-43047064)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               cli (0.152812)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cli (0.152812)

	343-461, - strand, RNAz p=0.5432
	542-792, - strand, RNAz p=0.942469

	3-141, gnl\|bosTau2\|chr8 (27893170-27893032)
	3-141, gnl\|canFam2\|chr11 (54711667-54711791)
	3-141, gnl\|danRer3\|chr5 (9191913-9191788)
	3-141, gnl\|echTel1\|scaffold_307714 (6601-6725)
	3-141, gnl\|fr1\|chrUn (250556255-250556380)
	3-141, gnl\|hg17\|chr3 (115433331-115433456)
	3-141, gnl\|Hg17\|chr9 (35096349-35096224)
	3-141, gnl\|loxAfr1\|scaffold_199032 (1176-1053)
	3-141, gnl\|mm7\|chr4 (43048191-43048316)
	3-141, gnl\|Mm7\|chr4 (43048290-43048167)
	3-141, gnl\|monDom2\|scaffold_17 (46809656-46809531)
	3-141, gnl\|oryCun1\|scaffold_210675 (38662-38538)
	3-141, gnl\|panTro1\|chr2 (117139608-117139733)
	3-141, gnl\|rheMac2\|chr2 (34244365-34244490)
	3-141, gnl\|rn3\|chr5 (59525222-59525347)
	3-141, gnl\|tetNig1\|chr12 (5462041-5462166)
	3-141, gnl\|xenTro1\|scaffold_713 (469737-469612)

	343-792, gnl\|bosTau2\|chr8 (27892310-27891863)
	343-792, gnl\|Hg17\|chr9 (35095377-35094932)
	343-792, gnl\|Mm7\|chr4 (43047509-43047064)