Non-Coding RNA Search

Ss1.1-rece37_c9.5

Sequence:


               
               CGCAGCTCCTACACTTCCCTGTGCTGCTGAGTTCTGCACCAGTCCTGTAGAGGTGATCCA
GAGTCAGGATGACTGTGCTCTCTAAGGAATACGGTTTCGTGGTTCTGACCGGCGCTGCCA
GCTTCATAATGGTCGGGCATCTAGCCATCAACGTCTCCAAGGCCCGCAAGAAGTACAAAG
TGGAGTATCCTACCATGTACAGCACGGACCCTGAAAACGGACACCTCTTCAACTGCATTC
AGCGAGCCCACCAGAACACGTTGGAAGTGTATCCGCCCTTCTTATTTTTTCTAGCCGTTG
GAGGTATTTACCACCCGCGTATAGTTTCTGGCTTGGGCTTGGCCTGGATTGTTGGACGAG
TTCTTTATGCTTATGGCTATTACACAGGAGAACCCAGCAAGCGAAGTCGGGGAGCACTGG
GCTCCATTGCCCTCATTGGCCTCATGGGCACCACTGTGTACTCTGCCTTCCAGCATCTTG
GTTGGGTTAAAACCGGCTTGGACTGTAAGTCCAAGTGCCATTAGAAAAGTATAGGGTGTT
TGAAAACCCTCATTCATTTCGAGTGACTTACTTTTATTTCCAGTTACTTTTTTTCCCCTA
AATATAATAAAAACTTAACTGGCCTCGGCCTCATACCTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGCTCCTACACTTCCCTGTGCTGCTGAGTTCTGCACCAGTCCTGTAGAGGTGATCCA
GAGTCAGGATGACTGTGCTCTCTAAGGAATACGGTTTCGTGGTTCTGACCGGCGCTGCCA
GCTTCATAATGGTCGGGCATCTAGCCATCAACGTCTCCAAGGCCCGCAAGAAGTACAAAG
TGGAGTATCCTACCATGTACAGCACGGACCCTGAAAACGGACACCTCTTCAACTGCATTC
AGCGAGCCCACCAGAACACGTTGGAAGTGTATCCGCCCTTCTTATTTTTTCTAGCCGTTG
GAGGTATTTACCACCCGCGTATAGTTTCTGGCTTGGGCTTGGCCTGGATTGTTGGACGAG
TTCTTTATGCTTATGGCTATTACACAGGAGAACCCAGCAAGCGAAGTCGGGGAGCACTGG
GCTCCATTGCCCTCATTGGCCTCATGGGCACCACTGTGTACTCTGCCTTCCAGCATCTTG
GTTGGGTTAAAACCGGCTTGGACTGTAAGTCCAAGTGCCATTAGAAAAGTATAGGGTGTT
TGAAAACCCTCATTCATTTCGAGTGACTTACTTTTATTTCCAGTTACTTTTTTTCCCCTA
AATATAATAAAAACTTAACTGGCCTCGGCCTCATACCTAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57111459|ref|XP_536147.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57111459|ref|XP_536147.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               59-185, gnl|bosTau2|chr3 (3948753-3948627)
               

               
               59-185, gnl|Hg17|chr1 (162350733-162350859)
               

               
               59-185, gnl|Mm7|chr1 (167353604-167353478)
               


               
               389-640, gnl|bosTau2|chr3 (3943339-3943095)
               

               
               389-640, gnl|Hg17|chr1 (162356261-162356513)
               

               
               389-640, gnl|Mm7|chr1 (167347830-167347568)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-185, gnl|bosTau2|chr3 (3948753-3948627)
               

               
               59-185, gnl|Hg17|chr1 (162350733-162350859)
               

               
               59-185, gnl|Mm7|chr1 (167353604-167353478)
               


               
               389-640, gnl|bosTau2|chr3 (3943339-3943095)
               

               
               389-640, gnl|Hg17|chr1 (162356261-162356513)
               

               
               389-640, gnl|Mm7|chr1 (167347830-167347568)

Expressed library(ies): 53 entry(ies)

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Expressed library(ies): 53 entry(ies)

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               duo (2.24641)
               

               
               col (2.14509)
               

               
               jej (1.48383)
               

               
               hlv (1.39256)
               

               
               che (0.817884)
               

               
               fbs (0.701385)
               

               
               cag (0.604778)
               

               
               cly (0.603209)
               

               
               ebs (0.591506)
               

               
               nlu (0.575043)
               

               
               hyp (0.571347)
               

               
               ssp (0.542079)
               

               
               ill (0.526778)
               

               
               fhi (0.508733)
               

               
               cli (0.458435)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               nmm (0.398406)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (2.24641)
               

               
               col (2.14509)
               

               
               jej (1.48383)
               

               
               hlv (1.39256)
               

               
               che (0.817884)
               

               
               fbs (0.701385)
               

               
               cag (0.604778)
               

               
               cly (0.603209)
               

               
               ebs (0.591506)
               

               
               nlu (0.575043)
               

               
               hyp (0.571347)
               

               
               ssp (0.542079)
               

               
               ill (0.526778)
               

               
               fhi (0.508733)
               

               
               cli (0.458435)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               nmm (0.398406)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	59-185, gnl\|bosTau2\|chr3 (3948753-3948627)
	59-185, gnl\|Hg17\|chr1 (162350733-162350859)
	59-185, gnl\|Mm7\|chr1 (167353604-167353478)

	389-640, gnl\|bosTau2\|chr3 (3943339-3943095)
	389-640, gnl\|Hg17\|chr1 (162356261-162356513)
	389-640, gnl\|Mm7\|chr1 (167347830-167347568)

	duo (2.24641)
	col (2.14509)
	jej (1.48383)
	hlv (1.39256)
	che (0.817884)
	fbs (0.701385)
	cag (0.604778)
	cly (0.603209)
	ebs (0.591506)
	nlu (0.575043)
	hyp (0.571347)
	ssp (0.542079)
	ill (0.526778)
	fhi (0.508733)
	cli (0.458435)
	amn (0.417711)
	hea (0.408998)
	nmm (0.398406)
	med (0.348756)
	eye (0.341006)
	cki (0.330469)
	cje (0.330469)
	nco (0.323468)
	eli (0.303628)
	eje (0.296501)
	cst (0.280073)
	fce (0.271592)
	pla (0.267344)
	cov (0.264306)
	pgl (0.236967)
	ece (0.229305)
	jca (0.22792)
	mas (0.210305)
	fli (0.202881)
	fcc (0.197785)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	mcp (0.170648)
	nje (0.16592)
	csp (0.161186)
	fat (0.147427)
	nca (0.136874)
	ute (0.132784)
	kid (0.129735)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)