Non-Coding RNA Search

Ss1.1-rece37_n7.5

Sequence:


               
               GAGAGAGGGAGGGCGAGGCCGGAGCCCGAGAAGCCACCGGGAGAACGAGCGGGTTAGCGG
GCCGGCGGGCGGGGCGCAGAGCCGGGCAGCGCAGGTACCTTGCGCCTCAACCAGCCTGCC
TCCTCACTTCCCTGAATGCTCCTCCGTGATTTCCTGCTTCTCCACCTTTGCTTATGCTTT
TCTCTCTGCCTGGAAGGCCACCCCTGACTCATCTCCGGCCTCGTGGAGAGAGCTTGAGCT
TTGGAGTCAGAGAAGCTTGGGTTTGGATCCTGGCTTCACCACTTAGCTCCATGACTTTGG
ACAAGTACCTTGAACACGTGTTTATTTAACCTCTTTGAGCCTCAGTTTCCTGATCTGTAA
AAATGAAAATAATGACACCTACCTTGCAGGGTTGTTGTAAGGATTCAATGAAATCATGTA
CACAAAGCAACTGACAAATAGTCAATAAAAGATCGTTGTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAGGGAGGGCGAGGCCGGAGCCCGAGAAGCCACCGGGAGAACGAGCGGGTTAGCGG
GCCGGCGGGCGGGGCGCAGAGCCGGGCAGCGCAGGTACCTTGCGCCTCAACCAGCCTGCC
TCCTCACTTCCCTGAATGCTCCTCCGTGATTTCCTGCTTCTCCACCTTTGCTTATGCTTT
TCTCTCTGCCTGGAAGGCCACCCCTGACTCATCTCCGGCCTCGTGGAGAGAGCTTGAGCT
TTGGAGTCAGAGAAGCTTGGGTTTGGATCCTGGCTTCACCACTTAGCTCCATGACTTTGG
ACAAGTACCTTGAACACGTGTTTATTTAACCTCTTTGAGCCTCAGTTTCCTGATCTGTAA
AAATGAAAATAATGACACCTACCTTGCAGGGTTGTTGTAAGGATTCAATGAAATCATGTA
CACAAAGCAACTGACAAATAGTCAATAAAAGATCGTTGTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               91-453, gnl|bosTau2|chr8 (28463822-28463454)
               

               
               91-453, gnl|canFam2|chr11 (55285785-55286127)
               

               
               91-453, gnl|echTel1|scaffold_314566 (44485-44811)
               

               
               91-453, gnl|hg17|chr9 (35719056-35719374)
               

               
               91-453, gnl|Hg17|chr9 (35719400-35719058)
               

               
               91-453, gnl|Mm7|chr4 (43573535-43573176)
               

               
               91-453, gnl|oryCun1|scaffold_181089 (27500-27169)
               

               
               91-453, gnl|panTro1|chr11 (36278158-36278478)
               

               
               91-453, gnl|rn3|chr5 (60037843-60038177)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-453, gnl|bosTau2|chr8 (28463822-28463454)
               

               
               91-453, gnl|canFam2|chr11 (55285785-55286127)
               

               
               91-453, gnl|echTel1|scaffold_314566 (44485-44811)
               

               
               91-453, gnl|hg17|chr9 (35719056-35719374)
               

               
               91-453, gnl|Hg17|chr9 (35719400-35719058)
               

               
               91-453, gnl|Mm7|chr4 (43573535-43573176)
               

               
               91-453, gnl|oryCun1|scaffold_181089 (27500-27169)
               

               
               91-453, gnl|panTro1|chr11 (36278158-36278478)
               

               
               91-453, gnl|rn3|chr5 (60037843-60038177)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ece (0.45861)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)

	91-453, gnl\|bosTau2\|chr8 (28463822-28463454)
	91-453, gnl\|canFam2\|chr11 (55285785-55286127)
	91-453, gnl\|echTel1\|scaffold_314566 (44485-44811)
	91-453, gnl\|hg17\|chr9 (35719056-35719374)
	91-453, gnl\|Hg17\|chr9 (35719400-35719058)
	91-453, gnl\|Mm7\|chr4 (43573535-43573176)
	91-453, gnl\|oryCun1\|scaffold_181089 (27500-27169)
	91-453, gnl\|panTro1\|chr11 (36278158-36278478)
	91-453, gnl\|rn3\|chr5 (60037843-60038177)