Non-Coding RNA Search

Ss1.1-rece38_a3.5

Sequence:


               
               TGACCCAGGGACAGCATTTCCCCGGAGCTGCAGCCCCCGCCTGGGGGGGATGGGCACAAT
CAGGCGAGATGGACGAGAAGATCAAGAAAGCCGAGGAGATGGCCCAGAGGCTCACCCGAG
CAGTGGCTGGTGGGGATGAACAGGTAGCTATGCAGTGTGCCATCTGGCTGGCAGAGCAGC
GGGTGCCCCTGAATGTGCAACTGAAGCCTGAGGTCTCCCCGACACAGGACATCAGGCTGT
GGGTGAGCGTGGAGGATGCACAGATGCACACGGTCACTATCTGGCTCACAGTGCGTCCTG
ACATGACGGTGGCCTCCCTCAAGGACATGGTGTTCCTGGACTACGGCTTCCCGCCAACCC
TGCAGCAGTGGGTGATTGGGCAGCGGCTGGCTCGGGACCAGGAGACCCTGCACTCCCACG
GGGTGCGGCGGAACGGGGACAGCGCCTACCTCTATCTGCTGTCAGCCTGCAACACCTCAC
TCAACCCTCAGGAGCTGCAGCGGGAGCGGCAGTTGCGGATGCTGGAAGGTGAGGCTCTGC
TCCTGAGTGGCTTGGACTCACCTGAGGTCGTAGGGCAAGAGGGAGCAGGGAGCAGAGCCC
AGTGACTTGGACTTGCCTGGAGGACGTTGTCCGTTGTGGGGAAGAGAGGACAAAGGACAT
CCCAGGAGGGCTTTCATTTCGAGAACCATTTAGAGAACAGCCAGCCTTGGGGAGTGGGGC
TGAGTTCAGTCCTGGGCCTGGCCATTTATCAGCTGTGTGACCTCGGACAAGTCCCTTCCT
GTCTCTGCTCCTCAGTGTTCTAAATCTATAAATTGGATATGATGATAATAGCTGGTTTTT
ATTCTGAAATTTTTTACTTCTTGGAGTTCCCTGGTGGTTCAGCGGGTTAAGGATCCAGTA
TTGTCACTGCTATGGTGCGGGTTCAGCCCCTGGCCTGGAATTTCCACCTGCTGAAGGTGT
GGCCAAAAATGAATGAGTGAATGAATAAATAAATAAATAAAACTTTTACTTCTCAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCCAGGGACAGCATTTCCCCGGAGCTGCAGCCCCCGCCTGGGGGGGATGGGCACAAT
CAGGCGAGATGGACGAGAAGATCAAGAAAGCCGAGGAGATGGCCCAGAGGCTCACCCGAG
CAGTGGCTGGTGGGGATGAACAGGTAGCTATGCAGTGTGCCATCTGGCTGGCAGAGCAGC
GGGTGCCCCTGAATGTGCAACTGAAGCCTGAGGTCTCCCCGACACAGGACATCAGGCTGT
GGGTGAGCGTGGAGGATGCACAGATGCACACGGTCACTATCTGGCTCACAGTGCGTCCTG
ACATGACGGTGGCCTCCCTCAAGGACATGGTGTTCCTGGACTACGGCTTCCCGCCAACCC
TGCAGCAGTGGGTGATTGGGCAGCGGCTGGCTCGGGACCAGGAGACCCTGCACTCCCACG
GGGTGCGGCGGAACGGGGACAGCGCCTACCTCTATCTGCTGTCAGCCTGCAACACCTCAC
TCAACCCTCAGGAGCTGCAGCGGGAGCGGCAGTTGCGGATGCTGGAAGGTGAGGCTCTGC
TCCTGAGTGGCTTGGACTCACCTGAGGTCGTAGGGCAAGAGGGAGCAGGGAGCAGAGCCC
AGTGACTTGGACTTGCCTGGAGGACGTTGTCCGTTGTGGGGAAGAGAGGACAAAGGACAT
CCCAGGAGGGCTTTCATTTCGAGAACCATTTAGAGAACAGCCAGCCTTGGGGAGTGGGGC
TGAGTTCAGTCCTGGGCCTGGCCATTTATCAGCTGTGTGACCTCGGACAAGTCCCTTCCT
GTCTCTGCTCCTCAGTGTTCTAAATCTATAAATTGGATATGATGATAATAGCTGGTTTTT
ATTCTGAAATTTTTTACTTCTTGGAGTTCCCTGGTGGTTCAGCGGGTTAAGGATCCAGTA
TTGTCACTGCTATGGTGCGGGTTCAGCCCCTGGCCTGGAATTTCCACCTGCTGAAGGTGT
GGCCAAAAATGAATGAGTGAATGAATAAATAAATAAATAAAACTTTTACTTCTCAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56204129|emb|CAI23017.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56204129|emb|CAI23017.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               509-688, + strand, RNAz p=0.996424

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-688, + strand, RNAz p=0.996424

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               89-236, gnl|bosTau2|chr13 (41899972-41900119)
               

               
               89-236, gnl|canFam2|chr24 (23409910-23409731)
               

               
               89-236, gnl|dasNov1|scaffold_106973 (650-829)
               

               
               89-236, gnl|echTel1|scaffold_114658 (679-854)
               

               
               89-236, gnl|fr1|chrUn (174373503-174373657)
               

               
               89-236, gnl|hg17|chr20 (338501-338680)
               

               
               89-236, gnl|Hg17|chr20 (338523-338670)
               

               
               89-236, gnl|loxAfr1|scaffold_49806 (5186-5010)
               

               
               89-236, gnl|mm7|chr2 (152071987-152071813)
               

               
               89-236, gnl|Mm7|chr2 (152071963-152071816)
               

               
               89-236, gnl|monDom2|scaffold_38 (2466699-2466882)
               

               
               89-236, gnl|oryCun1|scaffold_36320 (764-941)
               

               
               89-236, gnl|panTro1|chr21 (413456-413635)
               

               
               89-236, gnl|rheMac2|chr10 (33661630-33661809)
               

               
               89-236, gnl|rn3|chr3 (142565130-142564956)
               

               
               89-236, gnl|tetNig1|chr15_random (366000-366179)
               


               
               310-823, gnl|bosTau2|chr13 (41906774-41907292)
               

               
               310-823, gnl|Hg17|chr20 (346358-346889)
               

               
               310-823, gnl|Mm7|chr2 (152067286-152066849)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-236, gnl|bosTau2|chr13 (41899972-41900119)
               

               
               89-236, gnl|canFam2|chr24 (23409910-23409731)
               

               
               89-236, gnl|dasNov1|scaffold_106973 (650-829)
               

               
               89-236, gnl|echTel1|scaffold_114658 (679-854)
               

               
               89-236, gnl|fr1|chrUn (174373503-174373657)
               

               
               89-236, gnl|hg17|chr20 (338501-338680)
               

               
               89-236, gnl|Hg17|chr20 (338523-338670)
               

               
               89-236, gnl|loxAfr1|scaffold_49806 (5186-5010)
               

               
               89-236, gnl|mm7|chr2 (152071987-152071813)
               

               
               89-236, gnl|Mm7|chr2 (152071963-152071816)
               

               
               89-236, gnl|monDom2|scaffold_38 (2466699-2466882)
               

               
               89-236, gnl|oryCun1|scaffold_36320 (764-941)
               

               
               89-236, gnl|panTro1|chr21 (413456-413635)
               

               
               89-236, gnl|rheMac2|chr10 (33661630-33661809)
               

               
               89-236, gnl|rn3|chr3 (142565130-142564956)
               

               
               89-236, gnl|tetNig1|chr15_random (366000-366179)
               


               
               310-823, gnl|bosTau2|chr13 (41906774-41907292)
               

               
               310-823, gnl|Hg17|chr20 (346358-346889)
               

               
               310-823, gnl|Mm7|chr2 (152067286-152066849)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               eep (0.245128)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               nbm (0.0993246)

	89-236, gnl\|bosTau2\|chr13 (41899972-41900119)
	89-236, gnl\|canFam2\|chr24 (23409910-23409731)
	89-236, gnl\|dasNov1\|scaffold_106973 (650-829)
	89-236, gnl\|echTel1\|scaffold_114658 (679-854)
	89-236, gnl\|fr1\|chrUn (174373503-174373657)
	89-236, gnl\|hg17\|chr20 (338501-338680)
	89-236, gnl\|Hg17\|chr20 (338523-338670)
	89-236, gnl\|loxAfr1\|scaffold_49806 (5186-5010)
	89-236, gnl\|mm7\|chr2 (152071987-152071813)
	89-236, gnl\|Mm7\|chr2 (152071963-152071816)
	89-236, gnl\|monDom2\|scaffold_38 (2466699-2466882)
	89-236, gnl\|oryCun1\|scaffold_36320 (764-941)
	89-236, gnl\|panTro1\|chr21 (413456-413635)
	89-236, gnl\|rheMac2\|chr10 (33661630-33661809)
	89-236, gnl\|rn3\|chr3 (142565130-142564956)
	89-236, gnl\|tetNig1\|chr15_random (366000-366179)

	310-823, gnl\|bosTau2\|chr13 (41906774-41907292)
	310-823, gnl\|Hg17\|chr20 (346358-346889)
	310-823, gnl\|Mm7\|chr2 (152067286-152066849)

	eep (0.245128)
	ece (0.229305)
	tes (0.207814)
	sto (0.179824)
	fbs (0.175346)
	cje (0.165235)
	cli (0.152812)
	eli (0.151814)
	csk (0.140746)
	nbm (0.0993246)